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In case it may help anyone, I had a similar issue and it complained about network interfaces and VPC not being deletable.
This is a race condition caused by lack of Pulumi code optimization.
It's easily solvable in my end by going on to the console and in the following order: deleting the VPC endpoint, VPC network interfaces, VPC subnets, then the VPC itself.
Finally run Pulumi refresh to update the stack with the deleted resources, and then try to destroy the stack again.
Running pulumi destroy fails sometime when deleting eks Cluster
Here are the logs
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