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build.gradle
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build.gradle
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plugins {
id 'application'
id 'eclipse'
id 'maven-publish'
id 'checkstyle'
}
group = 'com.glencoesoftware'
version = '0.10.0-SNAPSHOT'
mainClassName = 'com.glencoesoftware.bioformats2raw.Converter'
sourceCompatibility = 1.8
targetCompatibility = 1.8
repositories {
mavenLocal()
mavenCentral()
maven {
url 'https://artifacts.glencoesoftware.com/artifactory/ome.releases'
}
maven {
url 'https://artifacts.glencoesoftware.com/artifactory/ome.external'
}
maven {
url 'https://artifacts.glencoesoftware.com/artifactory/scijava-thirdparty'
}
maven {
name 'Unidata'
url 'https://artifacts.glencoesoftware.com/artifactory/unidata-releases'
}
}
configurations.all {
resolutionStrategy.cacheChangingModulesFor 0, 'minutes'
exclude group: 'edu.ucar', 'module': 'cdm'
}
dependencies {
implementation 'net.java.dev.jna:jna:5.10.0'
implementation 'ome:formats-gpl:7.3.1'
implementation 'info.picocli:picocli:4.7.5'
implementation 'com.univocity:univocity-parsers:2.8.4'
implementation 'dev.zarr:jzarr:0.4.2'
// implementation 'org.carlspring.cloud.aws:s3fs-nio:1.0-SNAPSHOT'
// implementation 'io.nextflow:nxf-s3fs:1.1.0'
implementation 'org.lasersonlab:s3fs:2.2.3'
implementation 'javax.xml.bind:jaxb-api:2.3.0'
implementation group: 'ch.qos.logback', name: 'logback-classic', version: '1.3.14'
implementation group: 'ch.qos.logback', name: 'logback-core', version: '1.3.14'
implementation 'org.openpnp:opencv:4.7.0-0'
implementation 'me.tongfei:progressbar:0.9.0'
// https://github.com/junit-team/junit5-samples/blob/master/junit5-migration-gradle/build.gradle
def junitVintageVersion = '5.7.0'
def junitJupiterVersion = '5.7.0'
def junitPlatformVersion = '1.7.0'
testImplementation "org.junit.jupiter:junit-jupiter-api:${junitJupiterVersion}"
testRuntimeOnly "org.junit.jupiter:junit-jupiter-engine:${junitJupiterVersion}"
testRuntimeOnly "org.junit.platform:junit-platform-launcher:${junitPlatformVersion}"
// https://stackoverflow.com/questions/45462987/junit5-with-intellij-and-gradle
testImplementation "org.junit.jupiter:junit-jupiter-params:${junitJupiterVersion}"
}
jar {
manifest {
attributes(
"Created-By": "Gradle ${gradle.gradleVersion}",
"Build-Jdk": "${System.properties['java.version']} (${System.properties['java.vendor']} ${System.properties['java.vm.version']})",
"Built-By": System.properties['user.name'],
"Built-On": new java.text.SimpleDateFormat("yyyy-MM-dd'T'HH:mm:ss.SSSZ").format(new Date()),
"Implementation-Build": "git rev-parse --verify HEAD".execute().getText().trim(),
"Implementation-Title": "bioformats2raw converter",
"Implementation-Version": archiveVersion,
"Implementation-Vendor": "Glencoe Software Inc.",
"Main-Class": mainClassName
)
}
}
test {
useJUnitPlatform()
}
distributions {
main {
contents {
from("$projectDir") {
include 'README.md'
include 'LICENSE.txt'
}
}
}
}
startScripts {
// placing logback.xml somewhere under src/dist/lib/ keeps it out of
// bioformats2raw-*.jar but automatically includes it in the distribution zip
// the directory containing logback.xml must be explicitly added to the
// startup scripts' classpath, otherwise it will not be detected
// a subdirectory of 'src/dist/lib/' (not just 'src/dist/') is necessary,
// likely due to https://issues.gradle.org/browse/GRADLE-2991
// see also discussion in https://github.com/glencoesoftware/bioformats2raw/pull/169
classpath += files('src/dist/lib/config/')
doLast {
windowsScript.text = windowsScript.text.replaceAll('set CLASSPATH=.*', 'set CLASSPATH=.;%APP_HOME%\\\\lib\\\\*')
}
}
publishing {
publications {
bioformats2raw(MavenPublication) {
from components.java
pom {
licenses {
license {
name = 'GNU General Public License version 2'
url = 'http://www.gnu.org/licenses/gpl-2.0.txt'
}
}
}
}
}
repositories {
maven {
url 'https://repo.glencoesoftware.com/repository/bioformats2raw2ometiff/'
credentials {
username = project.properties.ArtifactoryUserName
password = project.properties.ArtifactoryPassword
}
}
}
}
checkstyle {
toolVersion = "8.26"
}