diff --git a/.codecov.yaml b/.codecov.yaml
new file mode 100644
index 0000000..8fe09b7
--- /dev/null
+++ b/.codecov.yaml
@@ -0,0 +1,11 @@
+comment: off
+coverage:
+  status:
+    project:
+      default:
+        threshold: 0.2%
+
+codecov:
+  require_ci_to_pass: false
+  notify:
+    wait_for_ci: true
diff --git a/.coveragerc b/.coveragerc
new file mode 100644
index 0000000..21f6880
--- /dev/null
+++ b/.coveragerc
@@ -0,0 +1,30 @@
+[run]
+omit =
+  glue_solar/conftest.py
+  glue_solar/*setup_package*
+  glue_solar/extern/*
+  glue_solar/version*
+  */glue_solar/conftest.py
+  */glue_solar/*setup_package*
+  */glue_solar/extern/*
+  */glue_solar/version*
+
+[report]
+exclude_lines =
+  # Have to re-enable the standard pragma
+  pragma: no cover
+  # Don't complain about packages we have installed
+  except ImportError
+  # Don't complain if tests don't hit assertions
+  raise AssertionError
+  raise NotImplementedError
+  # Don't complain about script hooks
+  def main(.*):
+  # Ignore branches that don't pertain to this version of Python
+  pragma: py{ignore_python_version}
+  # Don't complain about IPython completion helper
+  def _ipython_key_completions_
+  # typing.TYPE_CHECKING is False at runtime
+  if TYPE_CHECKING:
+  # Ignore typing overloads
+  @overload
diff --git a/.editorconfig b/.editorconfig
new file mode 100644
index 0000000..a2c6683
--- /dev/null
+++ b/.editorconfig
@@ -0,0 +1,17 @@
+# https://editorconfig.org
+root=true
+# utf, UNIX-style new line
+
+[*]
+charset=utf-8
+end_of_line=lf
+insert_final_newline=true
+trim_trailing_whitespace=true
+
+[*.{py,rst,md}]
+indent_style=space
+indent_size=4
+
+[*.yml]
+indent_style=space
+indent_size=2
diff --git a/.github/workflows/ci_workflows.yml b/.github/workflows/ci_workflows.yml
index 019d6b7..c962515 100644
--- a/.github/workflows/ci_workflows.yml
+++ b/.github/workflows/ci_workflows.yml
@@ -29,7 +29,7 @@ jobs:
         - linux: codestyle
           libraries:
           coverage: false
-        - linux: py39
+        - linux: py312
 
   test:
     needs: [core]
@@ -51,8 +51,7 @@ jobs:
         brew:
           - enchant
       envs: |
-        - linux: py310-devdeps
-        - linux: py39-docs
+        - linux: py312-docs
           coverage: false
-        - macos: py38
-        - windows: py39
+        - macos: py312
+        - windows: py312
diff --git a/.gitignore b/.gitignore
index c59d279..8dc01ba 100644
--- a/.gitignore
+++ b/.gitignore
@@ -47,3 +47,4 @@ pip-wheel-metadata
 glue_solar/_version.py
 .tmp
 .qt_for_python
+docs/generated/
diff --git a/.isort.cfg b/.isort.cfg
new file mode 100644
index 0000000..5b3f02a
--- /dev/null
+++ b/.isort.cfg
@@ -0,0 +1,14 @@
+[settings]
+balanced_wrapping = true
+skip =
+    docs/conf.py
+default_section = THIRDPARTY
+include_trailing_comma = true
+known_astropy = astropy, asdf, sunpy
+known_first_party = glue_solar
+length_sort = false
+length_sort_sections = stdlib
+line_length = 110
+multi_line_output = 3
+no_lines_before = LOCALFOLDER
+sections = STDLIB, THIRDPARTY, ASTROPY, FIRSTPARTY, LOCALFOLDER
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index bac4175..8a65d0e 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,31 +1,32 @@
+exclude: ".*(.csv|.fits|.fts|.fit|.header|.txt|tca.*|.json|.asdf)$|^CITATION.rst"
 repos:
-  - repo: https://github.com/myint/autoflake
-    rev: v1.4
+    # This should be before any formatting hooks like isort
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: "v0.6.5"
     hooks:
-      - id: autoflake
-        args: ['--in-place', '--remove-all-unused-imports', '--remove-unused-variable']
-        exclude: ".*(.fits|.fts|.fit|.txt|tca.*|extern.*|.rst|.md|__init__.py|docs/conf.py)$"
-  - repo: https://github.com/ambv/black
-    rev: 22.6.0
-    hooks:
-    - id: black
-  - repo: https://github.com/timothycrosley/isort
-    rev: 5.10.1
+      - id: ruff
+        args: ["--fix"]
+  - repo: https://github.com/PyCQA/isort
+    rev: 5.13.2
     hooks:
       - id: isort
-        args: ['--sp','setup.cfg']
-        exclude: ".*(.fits|.fts|.fit|.txt|tca.*|extern.*|.rst|.md|docs/conf.py)$"
   - repo: https://github.com/pre-commit/pre-commit-hooks
-    rev: v4.3.0
+    rev: v4.6.0
     hooks:
       - id: check-ast
       - id: check-case-conflict
       - id: trailing-whitespace
-        exclude: ".*(.fits|.fts|.fit|.txt)$"
       - id: check-yaml
       - id: debug-statements
       - id: check-added-large-files
+        args: ["--enforce-all", "--maxkb=1054"]
+        exclude: ""
       - id: end-of-file-fixer
-        exclude: ".*(.fits|.fts|.fit|.txt|tca.*)$"
       - id: mixed-line-ending
-        exclude: ".*(.fits|.fts|.fit|.txt|tca.*)$"
+  - repo: https://github.com/crate-ci/typos
+    rev: v1.22.9
+    hooks:
+      - id: typos
+ci:
+  autofix_prs: false
+  autoupdate_schedule: "quarterly"
diff --git a/.readthedocs.yml b/.readthedocs.yml
index a8a72e6..9152ff1 100644
--- a/.readthedocs.yml
+++ b/.readthedocs.yml
@@ -1,8 +1,9 @@
 version: 2
+
 build:
-  os: ubuntu-20.04
+  os: ubuntu-lts-latest
   tools:
-    python: "3.9"
+    python: "mambaforge-latest"
   apt_packages:
     - libxkbcommon-x11-0
     - libxcb-icccm4
@@ -12,6 +13,14 @@ build:
     - libxcb-render-util0
     - libxcb-xfixes0
     - libxcb-xinerama0
+  jobs:
+    post_checkout:
+      - git fetch --unshallow || true
+    pre_install:
+      - git update-index --assume-unchanged .rtd-environment.yml docs/conf.py
+
+conda:
+  environment: .rtd-environment.yml
 
 sphinx:
   builder: html
@@ -19,9 +28,9 @@ sphinx:
   fail_on_warning: false
 
 python:
-   install:
-     - method: pip
-       extra_requirements:
+  install:
+    - method: pip
+      extra_requirements:
         - all
         - docs
-       path: .
+      path: .
diff --git a/.rtd-environment.yml b/.rtd-environment.yml
new file mode 100644
index 0000000..fd564f2
--- /dev/null
+++ b/.rtd-environment.yml
@@ -0,0 +1,7 @@
+name: rtd_glue_solar
+channels:
+  - conda-forge
+dependencies:
+  - python=3.12
+  - pip
+  - graphviz!=2.42.*,!=2.43.*
diff --git a/.ruff.toml b/.ruff.toml
new file mode 100644
index 0000000..26ff6aa
--- /dev/null
+++ b/.ruff.toml
@@ -0,0 +1,37 @@
+target-version = "py310"
+line-length = 110
+exclude = [
+  ".git,",
+  "__pycache__",
+  "build",
+  "*version.py",
+]
+
+[lint]
+select = ["E", "F", "W", "UP", "PT"]
+extend-ignore = [
+  # pycodestyle (E, W)
+  "E501", # LineTooLong                             # TODO! fix
+  # pytest (PT)
+  "PT001", # Always use pytest.fixture()
+  "PT004", # Fixtures which don't return anything should have leading _
+  "PT007", # Parametrize should be lists of tuples  # TODO! fix
+  "PT011", # Too broad exception assert             # TODO! fix
+  "PT023", # Always use () on pytest decorators
+]
+
+[lint.per-file-ignores]
+# Part of configuration, not a package.
+"setup.py" = ["INP001"]
+"conftest.py" = ["INP001"]
+"docs/conf.py" = [
+  "E402"  # Module imports not at top of file
+]
+"docs/*.py" = [
+  "INP001",  # Implicit-namespace-package. The examples are not a package.
+]
+"__init__.py" = ["E402", "F401", "F403"]
+"test_*.py" = ["B011", "D", "E402", "PGH001", "S101"]
+
+[lint.pydocstyle]
+convention = "numpy"
diff --git a/LICENSE.rst b/LICENSE.rst
index 255e106..6e1bcb5 100644
--- a/LICENSE.rst
+++ b/LICENSE.rst
@@ -1,4 +1,4 @@
-Copyright (c) 2019-2022, Glue developers
+Copyright (c) 2019-2024, SunPy and Glue developers
 
 All rights reserved.
 
diff --git a/_typos.toml b/_typos.toml
new file mode 100644
index 0000000..6b141ba
--- /dev/null
+++ b/_typos.toml
@@ -0,0 +1,3 @@
+default.extend-ignore-identifiers-re = [
+    "NDCube",
+]
diff --git a/docs/api_reference.rst b/docs/api_reference.rst
index 78b1278..007e5e5 100644
--- a/docs/api_reference.rst
+++ b/docs/api_reference.rst
@@ -1,4 +1,4 @@
-.. _api_reference:
+.. _glue_solar_api_reference:
 
 =============
 API Reference
@@ -12,6 +12,3 @@ API Reference
 
 .. automodapi:: glue_solar.sources.maps
    :no-inheritance-diagram:
-
-.. automodapi:: glue_solar.pixel_extraction
-   :no-inheritance-diagram:
diff --git a/docs/conf.py b/docs/conf.py
index 7b3b702..e890fd9 100644
--- a/docs/conf.py
+++ b/docs/conf.py
@@ -1,46 +1,189 @@
+"""
+Configuration file for the Sphinx documentation builder.
+"""
+# -- stdlib imports ------------------------------------------------------------
+import os
+import datetime
+
+
+# -- Read the Docs Specific Configuration --------------------------------------
+# This needs to be done before sunpy is imported
+on_rtd = os.environ.get('READTHEDOCS', None) == 'True'
+if on_rtd:
+    os.environ['SUNPY_CONFIGDIR'] = '/home/docs/'
+    os.environ['HOME'] = '/home/docs/'
+    os.environ['LANG'] = 'C'
+    os.environ['LC_ALL'] = 'C'
+    os.environ['PARFIVE_HIDE_PROGRESS'] = 'True'
+
 # -- Project information -----------------------------------------------------
-project = "Glue Solar"
-copyright = "2020-2022, The SunPy Developers and The Glue Developers"
-author = "The SunPy Developers and The Glue Developers"
-# -- General configuration ---------------------------------------------------
+project = 'glue-solar'
+author = 'The SunPy Developers and The Glue Developers'
+copyright = f'{datetime.datetime.now().year}, {author}'
+
+# sphinxext-opengraph
+ogp_image = "https://raw.githubusercontent.com/sunpy/sunpy-logo/master/generated/sunpy_logo_word.png"
+ogp_use_first_image = True
+ogp_description_length = 160
+ogp_custom_meta_tags = [
+    '<meta property="og:ignore_canonical" content="true" />',
+]
+
+# Suppress warnings about overriding directives as we overload some of the
+# doctest extensions.
+suppress_warnings = ['app.add_directive', ]
+
+# Add any Sphinx extension module names here, as strings. They can be
+# extensions coming with Sphinx (named "sphinx.ext.*") or your custom
+# ones.
 extensions = [
-    "sphinx_automodapi.automodapi",
-    "sphinx_automodapi.smart_resolver",
-    "sphinx.ext.autodoc",
-    "sphinx.ext.coverage",
-    "sphinx.ext.doctest",
-    "sphinx.ext.inheritance_diagram",
-    "sphinx.ext.intersphinx",
-    "sphinx.ext.mathjax",
-    "sphinx.ext.napoleon",
-    "sphinx.ext.todo",
-    "sphinx.ext.viewcode",
+    'matplotlib.sphinxext.plot_directive',
+    'sphinx_automodapi.automodapi',
+    'sphinx_automodapi.smart_resolver',
+    'sphinx_changelog',
+    'sphinx.ext.autodoc',
+    'sphinx.ext.coverage',
+    'sphinx.ext.doctest',
+    'sphinx.ext.inheritance_diagram',
+    'sphinx.ext.intersphinx',
+    'sphinx.ext.mathjax',
+    'sphinx.ext.napoleon',
+    'sphinx.ext.todo',
+    'sphinx.ext.viewcode',
+    "sphinxext.opengraph",
+    'sphinx_design',
+    'sphinx_copybutton',
+    'hoverxref.extension',
 ]
-numpydoc_show_class_members = False
-templates_path = ["_templates"]
+
+# Set automodapi to generate files inside the generated directory
+automodapi_toctreedirnm = "generated/api"
+
+# Add any paths that contain templates here, relative to this directory.
+# templates_path = ["_templates"]
+
+# List of patterns, relative to source directory, that match files and
+# directories to ignore when looking for source files.
+# This pattern also affects html_static_path and html_extra_path.
+
+# Add any extra paths that contain custom files (such as robots.txt or
+# .htaccess) here, relative to this directory. These files are copied
+# directly to the root of the documentation.
+html_extra_path = ['robots.txt']
+
 exclude_patterns = ["_build", "Thumbs.db", ".DS_Store"]
+
+# The suffix(es) of source filenames.
+# You can specify multiple suffix as a list of string:
 source_suffix = ".rst"
+
+# The master toctree document.
+master_doc = 'index'
+
+# The reST default role (used for this markup: `text`) to use for all
+# documents. Set to the "smart" one.
+default_role = 'obj'
+
+# Disable having a separate return type row
+napoleon_use_rtype = False
+
+# Disable google style docstrings
+napoleon_google_docstring = False
+
+# Disable the use of param, which prevents a distinct "Other Parameters" section
+napoleon_use_param = False
+
+# Enable nitpicky mode, which forces links to be non-broken
+nitpicky = True
+# This is not used. See docs/nitpick-exceptions file for the actual listing.
+nitpick_ignore = []
+for line in open('nitpick-exceptions'):
+    if line.strip() == "" or line.startswith("#"):
+        continue
+    dtype, target = line.split(None, 1)
+    target = target.strip()
+    nitpick_ignore.append((dtype, target))
+
+
 # -- Options for intersphinx extension ---------------------------------------
+
+# Example configuration for intersphinx: refer to the Python standard library.
 intersphinx_mapping = {
     "python": (
         "https://docs.python.org/3/",
-        (None, "http://data.astropy.org/intersphinx/python3.inv"),
+        (None, "http://www.astropy.org/astropy-data/intersphinx/python3.inv"),
     ),
     "numpy": (
         "https://numpy.org/doc/stable/",
-        (None, "http://data.astropy.org/intersphinx/numpy.inv"),
+        (None, "http://www.astropy.org/astropy-data/intersphinx/numpy.inv"),
     ),
     "scipy": (
         "https://docs.scipy.org/doc/scipy/reference/",
-        (None, "http://data.astropy.org/intersphinx/scipy.inv"),
-    ),
-    "matplotlib": (
-        "https://matplotlib.org/",
-        (None, "http://data.astropy.org/intersphinx/matplotlib.inv"),
+        (None, "http://www.astropy.org/astropy-data/intersphinx/scipy.inv"),
     ),
+    "aiapy": ("https://aiapy.readthedocs.io/en/stable/", None),
     "astropy": ("https://docs.astropy.org/en/stable/", None),
-    "sunpy": ("https://docs.sunpy.org/en/stable/", None),
     "glueviz": ("http://docs.glueviz.org/en/stable/", None),
+    "irispy": ("https://irispy-lmsal.readthedocs.io/en/stable/", None),
+    "matplotlib": ("https://matplotlib.org/stable", None),
+    "reproject": ("https://reproject.readthedocs.io/en/stable/", None),
+    "skimage": ("https://scikit-image.org/docs/stable/", None),
+    "sunkit_image": ("https://docs.sunpy.org/projects/sunkit-image/en/stable/", None),
+    "sunkit_instruments": ("https://docs.sunpy.org/projects/sunkit-instruments/en/stable/", None),
+    "sunpy": ("https://docs.sunpy.org/en/stable/", None),
+}
+
+# -- Options for hoverxref -----------------------------------------------------
+if os.environ.get("READTHEDOCS"):
+    hoverxref_api_host = "https://readthedocs.org"
+
+    if os.environ.get("PROXIED_API_ENDPOINT"):
+        # Use the proxied API endpoint
+        # A RTD thing to avoid a CSRF block when docs are using a custom domain
+        hoverxref_api_host = "/_"
+
+hoverxref_auto_ref = False
+hoverxref_domains = ["py"]
+hoverxref_mathjax = True
+hoverxref_modal_hover_delay = 500
+hoverxref_tooltip_maxwidth = 600  # RTD main window is 696px
+hoverxref_intersphinx = list(intersphinx_mapping.keys())
+hoverxref_role_types = {
+    # Roles within the py domain
+    "attr": "tooltip",
+    "class": "tooltip",
+    "const": "tooltip",
+    "data": "tooltip",
+    "exc": "tooltip",
+    "func": "tooltip",
+    "meth": "tooltip",
+    "mod": "tooltip",
+    "obj": "tooltip",
+    # Roles within the std domain
+    "confval": "tooltip",
+    "hoverxref": "tooltip",
+    "ref": "tooltip",  # Would be used by hoverxref_auto_ref if we set it to True
+    "term": "tooltip",
 }
-# -- Options for HTML output -------------------------------------------------
-from sunpy_sphinx_theme.conf import *
+
+# -- Options for HTML output ---------------------------------------------------
+# The theme to use for HTML and HTML Help pages.  See the documentation for
+# a list of builtin themes.
+html_theme = "sunpy"
+
+# Add any paths that contain custom static files (such as style sheets) here,
+# relative to this directory. They are copied after the builtin static files,
+# so a file named "default.css" will overwrite the builtin "default.css".
+# html_static_path = ["_static"]
+
+# Render inheritance diagrams in SVG
+graphviz_output_format = "svg"
+
+graphviz_dot_args = [
+    '-Nfontsize=10',
+    '-Nfontname=Helvetica Neue, Helvetica, Arial, sans-serif',
+    '-Efontsize=10',
+    '-Efontname=Helvetica Neue, Helvetica, Arial, sans-serif',
+    '-Gfontsize=10',
+    '-Gfontname=Helvetica Neue, Helvetica, Arial, sans-serif'
+]
diff --git a/docs/dev_guide/index.rst b/docs/dev_guide/index.rst
index 7dd2e8b..a6c7aa3 100644
--- a/docs/dev_guide/index.rst
+++ b/docs/dev_guide/index.rst
@@ -1,3 +1,6 @@
+.. _glue_solar_dev_docs_index:
+
+=======================
 Developer Documentation
 =======================
 
diff --git a/docs/dev_guide/loader-customization.rst b/docs/dev_guide/loader-customization.rst
index 4e2842a..7effd8d 100644
--- a/docs/dev_guide/loader-customization.rst
+++ b/docs/dev_guide/loader-customization.rst
@@ -1,4 +1,4 @@
-.. _loader_customization_guide:
+.. _glue_solar_dev_docs_loader_customization:
 
 ===============================
 Data Loader Customization Guide
diff --git a/docs/index.rst b/docs/index.rst
index bcbf412..cdd8505 100644
--- a/docs/index.rst
+++ b/docs/index.rst
@@ -1,5 +1,6 @@
-.. _glue-solar:
+.. _glue-solar-index:
 
+========================
 glue-solar documentation
 ========================
 
diff --git a/docs/nitpick-exceptions b/docs/nitpick-exceptions
new file mode 100644
index 0000000..9d9486a
--- /dev/null
+++ b/docs/nitpick-exceptions
@@ -0,0 +1,6 @@
+# Prevents sphinx nitpicky mode picking up on optional
+# (see https://github.com/sphinx-doc/sphinx/issues/6861)
+# Even if it was "fixed", still broken
+py:class optional
+# See https://github.com/numpy/numpy/issues/10039
+py:obj numpy.datetime64
diff --git a/docs/robots.txt b/docs/robots.txt
new file mode 100644
index 0000000..df810cf
--- /dev/null
+++ b/docs/robots.txt
@@ -0,0 +1,6 @@
+User-agent: *
+Allow: /*/latest/
+Allow: /en/latest/   # Fallback for bots that don't understand wildcards
+Allow: /*/stable/
+Allow: /en/stable/   # Fallback for bots that don't understand wildcards
+Disallow: /
diff --git a/docs/user_guide/guide-to-glue-1dprofile-viewer-for-iris-data.rst b/docs/user_guide/guide-to-glue-1dprofile-viewer-for-iris-data.rst
index 6b28113..fc58330 100644
--- a/docs/user_guide/guide-to-glue-1dprofile-viewer-for-iris-data.rst
+++ b/docs/user_guide/guide-to-glue-1dprofile-viewer-for-iris-data.rst
@@ -1,4 +1,4 @@
-.. _guide_to_1dprofile_viewer_for_iris_data:
+.. _glue_solar_user_guide_1dprofile_viewer_for_iris_data:
 
 =============================================================================
 A guide to using ``glue``'s 1D profile viewer to probe IRIS Level 2 data sets
@@ -37,7 +37,7 @@ Now we are ready to visualize the 2D slices of the imported data cubes.
 Using ``glue``'s 2D image viewer to get the indices and slices needed for the 1D spectrum plot
 ----------------------------------------------------------------------------------------------
 
-To plot 2D slices of the ND data cubes, we will need to drag the data ("C_II_1336" in this
+To plot 2D slices of the AND data cubes, we will need to drag the data ("C_II_1336" in this
 example) concerned from the "Data Collection" area and drop it at the large plotting window
 to the right, as shown in the following image:
 
diff --git a/docs/user_guide/index.rst b/docs/user_guide/index.rst
index f8624ec..68966aa 100644
--- a/docs/user_guide/index.rst
+++ b/docs/user_guide/index.rst
@@ -1,5 +1,6 @@
-.. _users_guide:
+.. _glue_solar_users_guide_index:
 
+==========
 User Guide
 ==========
 
diff --git a/docs/user_guide/loading-aia-and-hmi.rst b/docs/user_guide/loading-aia-and-hmi.rst
index ae786df..849aded 100644
--- a/docs/user_guide/loading-aia-and-hmi.rst
+++ b/docs/user_guide/loading-aia-and-hmi.rst
@@ -1,4 +1,4 @@
-.. _loading_aia_and_hmi_files:
+.. _glue_solar_users_guide_loading_aia_and_hmi_files:
 
 =========================================================
 Loading and over-plotting AIA and HMI files as sunpy Maps
diff --git a/docs/user_guide/loading-iris-level-2-raster-and-sji-data.rst b/docs/user_guide/loading-iris-level-2-raster-and-sji-data.rst
index 59ce4e4..25b6e8e 100644
--- a/docs/user_guide/loading-iris-level-2-raster-and-sji-data.rst
+++ b/docs/user_guide/loading-iris-level-2-raster-and-sji-data.rst
@@ -1,4 +1,4 @@
-.. _loading_iris_level_2_raster_and_sji_files:
+.. _glue_solar_users_guide_loading_iris_level_2_raster_and_sji_files:
 
 =======================================================
 Loading IRIS Level 2 Raster and SJI Data Files Together
diff --git a/glue_solar/__init__.py b/glue_solar/__init__.py
index 368309c..0bcf857 100644
--- a/glue_solar/__init__.py
+++ b/glue_solar/__init__.py
@@ -1,16 +1,13 @@
 from glue.config import colormaps
-from glue.viewers.image.qt import ImageViewer
 
 from sunpy.visualization.colormaps import cmlist
 
-from glue_solar.pixel_extraction.pixel_extraction import PixelExtractionTool  # NOQA
-from glue_solar.sources import iris, maps, sst  # NOQA
+from glue_solar.sources import iris, maps, sst
 from glue_solar.version import version as __version__
 
+__all__ = ["setup", "__version__", "iris", "maps", "sst"]
 
 def setup():
-    # List of all plugins to enable to the default ImageViewer
-    ImageViewer.tools.append("solar:pixel_extraction")
     # Enables sunpy colormaps to be used in glueviz
     for _, ctable in sorted(cmlist.items()):
         colormaps.add(ctable.name, ctable)
diff --git a/glue_solar/pixel_extraction/__init__.py b/glue_solar/pixel_extraction/__init__.py
deleted file mode 100644
index e69de29..0000000
diff --git a/glue_solar/pixel_extraction/pixel_extraction.py b/glue_solar/pixel_extraction/pixel_extraction.py
deleted file mode 100644
index ed58620..0000000
--- a/glue_solar/pixel_extraction/pixel_extraction.py
+++ /dev/null
@@ -1,64 +0,0 @@
-from glue.config import viewer_tool
-from glue.core.data_derived import IndexedData
-from glue.viewers.matplotlib.toolbar_mode import ToolbarModeBase
-
-__all__ = ["PixelExtractionTool"]
-
-
-@viewer_tool
-class PixelExtractionTool(ToolbarModeBase):
-    """
-    Create a "dervied dataset" corresponding to the selected pixel.
-    """
-
-    icon = "pencil"
-    tool_id = "solar:pixel_extraction"
-    action_text = "Pixel"
-    tool_tip = "Extract data for a single pixel based on mouse location"
-    status_tip = "CLICK to select a point, CLICK and DRAG to update the extracted dataset in real time"
-    _pressed = False
-
-    def __init__(self, *args, **kwargs):
-        super(PixelExtractionTool, self).__init__(*args, **kwargs)
-        self._move_callback = self._extract_pixel
-        self._press_callback = self._on_press
-        self._release_callback = self._on_release
-        self._derived = None
-        self._line_x = self.viewer.axes.axvline(0, color="orange")
-        self._line_x.set_visible(False)
-        self._line_y = self.viewer.axes.axhline(0, color="orange")
-        self._line_y.set_visible(False)
-
-    def _on_press(self, mode):
-        self._pressed = True
-        self._extract_pixel(mode)
-
-    def _on_release(self, mode):
-        self._pressed = False
-
-    def _extract_pixel(self, mode):
-        if not self._pressed:
-            return
-        x, y = self._event_xdata, self._event_ydata
-        if x is None or y is None:
-            return None
-        xi = int(round(x))
-        yi = int(round(y))
-        indices = [None] * self.viewer.state.reference_data.ndim
-        indices[self.viewer.state.x_att.axis] = xi
-        indices[self.viewer.state.y_att.axis] = yi
-        self._line_x.set_data([x, x], [0, 1])
-        self._line_x.set_visible(True)
-        self._line_y.set_data([0, 1], [y, y])
-        self._line_y.set_visible(True)
-        self.viewer.axes.figure.canvas.draw()
-        if self._derived is None:
-            self._derived = IndexedData(self.viewer.state.reference_data, indices)
-            self.viewer.session.data_collection.append(self._derived)
-        else:
-            try:
-                self._derived.indices = indices
-            except TypeError:
-                self.viewer.session.data_collection.remove(self._derived)
-                self._derived = IndexedData(self.viewer.state.reference_data, indices)
-                self.viewer.session.data_collection.append(self._derived)
diff --git a/glue_solar/pixel_extraction/tests/__init__.py b/glue_solar/pixel_extraction/tests/__init__.py
deleted file mode 100644
index e69de29..0000000
diff --git a/glue_solar/pixel_extraction/tests/test_pixel_extraction.py b/glue_solar/pixel_extraction/tests/test_pixel_extraction.py
deleted file mode 100644
index 044247e..0000000
--- a/glue_solar/pixel_extraction/tests/test_pixel_extraction.py
+++ /dev/null
@@ -1,71 +0,0 @@
-import numpy as np
-from glue.app.qt import GlueApplication
-from glue.core.data import Data
-from glue.utils.qt import process_events
-from glue.viewers.image.qt import ImageViewer
-from numpy.testing import assert_allclose
-
-
-class TestPixelExtraction:
-    def setup_method(self, method):
-        self.data = Data(label="d1")
-        self.data["x"] = np.arange(24).reshape((3, 4, 2)).astype(float)
-
-        self.app = GlueApplication()
-        self.session = self.app.session
-        self.hub = self.session.hub
-
-        self.data_collection = self.session.data_collection
-        self.data_collection.append(self.data)
-
-        self.viewer = self.app.new_data_viewer(ImageViewer)
-
-    def teardown_method(self, method):
-        self.viewer.close(warn=False)
-        self.viewer = None
-        self.app.close()
-        self.app = None
-
-    def test_navigate_sync_image(self):
-        self.viewer.add_data(self.data)
-        self.viewer.toolbar.active_tool = "solar:pixel_extraction"
-
-        self.viewer.axes.figure.canvas.draw()
-        process_events()
-
-        x, y = self.viewer.axes.transData.transform([[1, 2]])[0]
-        self.viewer.axes.figure.canvas.button_press_event(x, y, 1)
-        self.viewer.axes.figure.canvas.button_release_event(x, y, 1)
-        assert len(self.data_collection) == 2
-
-        derived1 = self.data_collection[1]
-        assert derived1.label == "d1[:,2,1]"
-        assert derived1.shape == (3,)
-        assert_allclose(derived1["x"], self.data["x"][:, 2, 1])
-
-        x, y = self.viewer.axes.transData.transform([[1, 1]])[0]
-        self.viewer.axes.figure.canvas.button_press_event(x, y, 1)
-        self.viewer.axes.figure.canvas.button_release_event(x, y, 1)
-        assert len(self.data_collection) == 2
-
-        derived2 = self.data_collection[1]
-        assert derived2 is derived1
-        assert derived2.label == "d1[:,1,1]"
-        assert derived2.shape == (3,)
-        assert_allclose(derived2["x"], self.data["x"][:, 1, 1])
-
-        self.viewer.state.x_att = self.data.pixel_component_ids[0]
-
-        self.viewer.axes.figure.canvas.draw()
-        process_events()
-
-        x, y = self.viewer.axes.transData.transform([[1, 0]])[0]
-        self.viewer.axes.figure.canvas.button_press_event(x, y, 1)
-        self.viewer.axes.figure.canvas.button_release_event(x, y, 1)
-        assert len(self.data_collection) == 2
-
-        derived3 = self.data_collection[1]
-        assert derived3 is not derived1
-        assert derived3.label == "d1[1,0,:]"
-        assert derived3.shape == (2,)
-        assert_allclose(derived3["x"], self.data["x"][1, 0, :])
diff --git a/glue_solar/sources/iris.py b/glue_solar/sources/iris.py
index 62d0f69..cfbe5d0 100644
--- a/glue_solar/sources/iris.py
+++ b/glue_solar/sources/iris.py
@@ -9,8 +9,8 @@
 from glue.core.data_factories import is_fits
 from glue.core.visual import VisualAttributes
 from irispy.io import read_files
-from irispy.sji import IRISMapCube, IRISMapCubeSequence
-from irispy.spectrograph import IRISCollection
+from irispy.sji import SJICube
+from irispy.spectrograph import SpectrogramCube
 from qtpy import QtWidgets
 
 from astropy.io import fits
@@ -20,7 +20,7 @@
 __all__ = ["import_iris", "read_iris_files"]
 
 
-@qglue_parser(IRISCollection)
+@qglue_parser(SpectrogramCube)
 def _parse_iris_raster(data):
     """
     Parse IRIS Level 2 raster files so that it can be loaded by glue.
@@ -41,7 +41,7 @@ def _parse_iris_raster(data):
     return w_data
 
 
-@qglue_parser(IRISMapCube)
+@qglue_parser(SJICube)
 def _parse_iris_sji(data, file_header):
     """
     Parse IRIS Level 2 SJI files so that it can be loaded by glue.
@@ -68,9 +68,9 @@ def read_iris_files(file_path):
     """
     # TODO: Memmap in future.
     data = read_files(file_path, uncertainty=False, memmap=False)
-    if isinstance(data, IRISMapCubeSequence):
+    if isinstance(data, SJICube):
         return _parse_iris_sji(data, fits.getheader(file_path))
-    elif isinstance(data, IRISCollection):
+    elif isinstance(data, SpectrogramCube):
         return _parse_iris_raster(data)
     else:
         raise ValueError(f"Unrecognised IRIS file type for {file_path}")
diff --git a/glue_solar/sources/loaders/iris.py b/glue_solar/sources/loaders/iris.py
index 4c3e665..379a394 100644
--- a/glue_solar/sources/loaders/iris.py
+++ b/glue_solar/sources/loaders/iris.py
@@ -5,8 +5,7 @@
 from glue.core.coordinates import WCSCoordinates
 from glue.core.data import Data
 from glue.core.visual import VisualAttributes
-from glue.utils.qt import get_qapp
-from glue.utils.qt.helpers import load_ui
+from glue_qt.utils import get_qapp, load_ui
 from irispy.io import read_files
 from qtpy import QtWidgets
 from qtpy.QtCore import Qt
@@ -69,28 +68,31 @@ def populate_table_sji(self):
         self.sjis.resizeColumnToContents(1)
 
     def get_raster_windows(self):
+        if  not self.raster_files:
+            return []
         with fits.open(self.raster_files[0]) as hdulist:
             return list(
-                hdulist[0].header["TDESC{0}".format(i)]
+                hdulist[0].header[f"TDESC{i}"]
                 for i in range(1, hdulist[0].header["NWIN"] + 1)
             )
 
     def get_sji_windows(self):
         windows = {}
+        if not self.sji_files:
+            return windows
         for sji in self.sji_files:
             with fits.open(sji) as hdul:
                 windows[hdul[0].header["TDESC1"]] = sji
-
         return windows
 
     def load_sji(self, sji):
         with fits.open(sji) as hdul:
-            hdul.verify("fix")
+            hdul.verify("silentfix+ignore")
             label = hdul[0].header["TDESC1"] + hdul[0].header["OBSID"]
             data = Data(label=label)
             data.coords = WCSCoordinates(hdul[0].header)
             data.meta = hdul[0].header
-            preferred_cmap_name = "IRIS " + hdul[0].header["TDESC1"].replace("_", " ")
+            preferred_cmap_name = f"iris{hdul[0].header["TDESC1"].replace("_","").lower()}"
             data.style = VisualAttributes(preferred_cmap=preferred_cmap_name)
             data.add_component(Component(hdul[0].data), label)
 
diff --git a/glue_solar/sources/loaders/maps.py b/glue_solar/sources/loaders/maps.py
index aa304df..650d88e 100644
--- a/glue_solar/sources/loaders/maps.py
+++ b/glue_solar/sources/loaders/maps.py
@@ -4,8 +4,7 @@
 from glue.core.component import Component
 from glue.core.data import Data
 from glue.core.visual import VisualAttributes
-from glue.utils.qt import get_qapp
-from glue.utils.qt.helpers import load_ui
+from glue_qt.utils import get_qapp, load_ui
 from qtpy import QtWidgets
 from qtpy.QtCore import Qt
 
diff --git a/pyproject.toml b/pyproject.toml
index 349a6be..ee72b0d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,62 +1,79 @@
 [build-system]
 requires = [
-    "setuptools>=56,!=61.0.0",
-    "setuptools_scm[toml]>=6.2",
-    "wheel",
+  "setuptools>=62.1",
+  "setuptools_scm[toml]>=6.2",
+  "wheel",
 ]
-build-backend = 'setuptools.build_meta'
-
-[ tool.gilesbot ]
-  [ tool.gilesbot.pull_requests ]
-    enabled = true
-
-  [ tool.gilesbot.towncrier_changelog ]
-    enabled = true
-    verify_pr_number = true
-    changelog_skip_label = "No Changelog Entry Needed"
-    help_url = "https://github.com/glueviz/glue-solar/blob/main/changelog/README.rst"
-    changelog_missing_long = "There isn't a changelog file in this pull request. Please add a changelog file to the `changelog/` directory following the instructions in the changelog [README](https://github.com/glueviz/glue-solar/blob/main/changelog/README.rst)."
-    type_incorrect_long = "The changelog file you added is not one of the allowed types. Please use one of the types described in the changelog [README](https://github.com/glueviz/glue-solar/blob/main/changelog/README.rst)"
-    number_incorrect_long = "The number in the changelog file you added does not match the number of this pull request. Please rename the file."
-
-[tool.towncrier]
-    package = "glue-solar"
-    filename = "CHANGELOG.rst"
-    directory = "changelog/"
-    issue_format = "`#{issue} <https://github.com/glueviz/glue-solar/pull/{issue}>`__"
-    title_format = "{version} ({project_date})"
-
-    [[tool.towncrier.type]]
-        directory = "breaking"
-        name = "Breaking Changes"
-        showcontent = true
-
-    [[tool.towncrier.type]]
-      directory = "deprecation"
-      name = "Deprecations"
-      showcontent = true
-
-    [[tool.towncrier.type]]
-      directory = "removal"
-      name = "Removals"
-      showcontent = true
-
-    [[tool.towncrier.type]]
-      directory = "feature"
-      name = "New Features"
-      showcontent = true
-
-    [[tool.towncrier.type]]
-      directory = "bugfix"
-      name = "Bug Fixes"
-      showcontent = true
-
-    [[tool.towncrier.type]]
-      directory = "doc"
-      name = "Documentation"
-      showcontent = true
-
-    [[tool.towncrier.type]]
-      directory = "trivial"
-      name = "Internal Changes"
-      showcontent = true
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "glue-solar"
+description = "Solar Physics plugin for GlueViz"
+requires-python = ">=3.10"
+readme = { file = "README.rst", content-type = "text/x-rst" }
+license = { file = "LICENSE.rst" }
+authors = [
+  { name = "The SunPy Community", email = "sunpy@googlegroups.com" },
+]
+dependencies = [
+  "glue-core[all]>=1.2.0",
+  "glue-qt[qt]>=0.3.0",
+  "sunpy[map,net,coordinates]>=6.0.0",
+  "irispy-lmsal[all]>=0.2.0rc1",
+]
+dynamic = ["version"]
+keywords = ["solar physics", "solar", "science", "sun", "visualization", "coordinates", "glueviz"]
+classifiers = [
+  "Development Status :: 2 - Pre-Alpha",
+  "Intended Audience :: Science/Research",
+  "License :: OSI Approved :: BSD License",
+  "Natural Language :: English",
+  "Operating System :: OS Independent",
+  "Programming Language :: Python",
+  "Programming Language :: Python :: 3",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Topic :: Scientific/Engineering :: Physics",
+]
+
+[project.optional-dependencies]
+tests = [
+  "pytest-astropy",
+]
+docs = [
+  "sphinx>=5.0.0",
+  "sphinx-automodapi>=0.14.1",
+  "sphinx-changelog>=1.5.0",
+  "sphinx-copybutton>=0.5.0",
+  "sphinx-design>=0.2.0",
+  "sphinxext-opengraph>=0.6.0",
+  "sunpy-sphinx-theme>=2.0.3",
+  "sphinx-hoverxref>=1.3.0",
+]
+
+[project.urls]
+Homepage = "https://glueviz.org"
+Download = "https://pypi.org/project/glue-solar/"
+"Source Code" = "https://github.com/glue-viz/glue-solar"
+Documentation = "https://glue-solar.readthedocs.io/en/latest/"
+Changelog = "https://glue-solar.readthedocs.io/en/latest/"
+"Issue Tracker" = "https://github.com/glue-viz/glue-solar/issues"
+
+[tool.setuptools]
+zip-safe = true
+include-package-data = true
+platforms = ["any"]
+provides = ["glue_solar"]
+license-files = ["LICENSE.rst"]
+
+[tool.setuptools.packages.find]
+include = ["glue_solar*"]
+exclude = ["glue_solar._dev*"]
+
+
+[tool.setuptools_scm]
+write_to = "glue_solar/_version.py"
+
+[project.entry-points."glue.plugins"]
+glue_solar = "glue_solar:setup"
diff --git a/pytest.ini b/pytest.ini
new file mode 100644
index 0000000..2e1d125
--- /dev/null
+++ b/pytest.ini
@@ -0,0 +1,46 @@
+[pytest]
+minversion = 7.0
+testpaths =
+    glue_solar
+    docs
+norecursedirs =
+    .tox
+    build
+    docs/_build
+    docs/generated
+    *.egg-info
+    examples
+    glue_solar/_dev
+    .history
+    tools
+    glue_solar/extern
+    benchmarks
+doctest_plus = enabled
+doctest_optionflags =
+    NORMALIZE_WHITESPACE
+    FLOAT_CMP
+    ELLIPSIS
+addopts =
+    --doctest-rst
+    -p no:unraisableexception
+    -p no:theadexception
+    --arraydiff
+    --doctest-ignore-import-errors
+    --doctest-continue-on-failure
+remote_data_strict = true
+junit_family = xunit1
+filterwarnings =
+    # Turn all warnings into errors so they do not pass silently.
+    error
+    # Do not fail on pytest config issues (i.e. missing plugins) but do show them
+    always::pytest.PytestConfigWarning
+    # A list of warnings to ignore follows. If you add to this list, you MUST
+    # add a comment or ideally a link to an issue that explains why the warning
+    # is being ignored
+    # These should have been fixed by numpy 2.0 but possible its due to the
+    # other packages not building agasint it yet?
+    # This should be at the top of the list as well.
+    ignore:.*may indicate binary incompatibility.*
+    ignore:.*Jupyter is migrating its paths to use standard platformdirs.*
+    ignore:.*could not determine irispy package.*
+    ignore:.*Setting colormap using "color" key is deprecated.*
diff --git a/setup.cfg b/setup.cfg
index 7ed3896..6147ff7 100644
--- a/setup.cfg
+++ b/setup.cfg
@@ -1,71 +1,3 @@
-[metadata]
-name = glue-solar
-provides = glue_solar
-description = Solar physics focused plugin for glueviz
-long_description = file: README.rst
-author = Nabil Freij
-author_email = freij@baeri.org
-license = BSD 3-Clause License
-license_file = LICENSE.rst
-url = https://github.com/glue-viz/glue-solar
-edit_on_github = True
-github_project = glueviz/glue-solar
-platform = any
-keywords = solar physics, solar, science, sun, wcs, coordinates, visualization, glue, glueviz
-classifiers =
-    Development Status :: 2 - Pre-Alpha
-    Intended Audience :: Science/Research
-    License :: OSI Approved :: BSD License
-    Natural Language :: English
-    Operating System :: OS Independent
-    Programming Language :: Python
-    Programming Language :: Python :: 3
-    Programming Language :: Python :: 3.8
-    Programming Language :: Python :: 3.9
-    Programming Language :: Python :: 3.10
-    Topic :: Scientific/Engineering :: Physics
-
-[options]
-zip_safe = True
-python_requires = >=3.8
-packages = find:
-include_package_data = True
-setup_requires =
-    setuptools_scm
-install_requires =
-    glue-core[all,qt]>=1.2.2
-    irispy-lmsal>=0.2.0rc1
-
-[options.extras_require]
-tests =
-    pytest
-docs =
-    sphinx
-    sphinx-automodapi
-    sunpy-sphinx-theme
-
-[options.entry_points]
-glue.plugins =
-    glue_solar=glue_solar:setup
-
-[tool:pytest]
-testpaths = "glue_solar" "docs"
-norecursedirs = ".tox" "build" "docs[\/]_build" "docs[\/]generated" "*.egg-info" "examples" ".history"
-addopts = -p no:unraisableexception -p no:threadexception
-filterwarnings =
-    error
-    # Do not fail on pytest config issues (i.e. missing plugins) but do show them
-    always::pytest.PytestConfigWarning
-    #
-    # A list of warnings to ignore follows. If you add to this list, you MUST
-    # add a comment or ideally a link to an issue that explains why the warning
-    # is being ignored
-    #
-    #
-    ignore:the imp module is deprecated in favour of importlib
-    ignore:numpy.ndarray size changed:RuntimeWarning
-    ignore:distutils Version classes are deprecated. Use packaging.version instead.:DeprecationWarning
-    ignore:numpy.ufunc size changed:RuntimeWarning
 
 [pycodestyle]
 max_line_length = 110
diff --git a/setup.py b/setup.py
index 968f552..2d4f85f 100755
--- a/setup.py
+++ b/setup.py
@@ -1,25 +1,5 @@
-#!/usr/bin/env python
-from setuptools import setup  # isort:skip
-import os
-from itertools import chain
+# We can remove this file when the default pip version
+# that Python installs is pip >= 21.3
+from setuptools import setup
 
-from setuptools.config import read_configuration
-
-################################################################################
-# Programmatically generate some extras combos.
-################################################################################
-extras = read_configuration("setup.cfg")["options"]["extras_require"]
-
-# Dev is everything
-extras["dev"] = list(chain(*extras.values()))
-
-# All is everything but tests and docs
-exclude_keys = ("tests", "docs", "dev")
-ex_extras = dict(filter(lambda i: i[0] not in exclude_keys, extras.items()))
-# Concatenate all the values together for 'all'
-extras["all"] = list(chain.from_iterable(ex_extras.values()))
-
-setup(
-    extras_require=extras,
-    use_scm_version={"write_to": os.path.join("glue_solar", "_version.py")},
-)
+setup()
diff --git a/tox.ini b/tox.ini
index 41d078b..b72befb 100644
--- a/tox.ini
+++ b/tox.ini
@@ -1,50 +1,88 @@
 [tox]
+min_version = 4.0
+requires =
+    tox-pypi-filter>=0.14
 envlist =
-    py{38,39,310}{,-devdeps,-docs}
+    py{310,311,312}
+    build_docs
+    linkcheck
     codestyle
-requires =
-    setuptools >= 30.3.0
-    pip >= 19.3.1
-isolated_build = true
 
 [testenv]
+allowlist_externals=
+    /bin/sh
+# Run the tests in a temporary directory to make sure that we don't import anything from the source tree
 changedir = .tmp/{envname}
 description =
     run tests
-passenv =
+pass_env =
+    # A variable to tell tests we are on a CI system
+    CI
+    # Custom compiler locations (such as ccache)
+    CC
+    # Location of locales (needed by sphinx on some systems)
+    LOCALE_ARCHIVE
+    # If the user has set a LC override we should follow it
+    LC_ALL
+    # TBD
     DISPLAY
+    # TBD
     HOME
 setenv =
-    QT_DEBUG_PLUGINS = 0
-    HIDE_PARFIVE_PROGESS = True
-    PYTEST_COMMAND = pytest -vvv -s -raR --pyargs glue_solar --cov-report=xml --cov=glue_solar --cov-config={toxinidir}/setup.cfg {toxinidir}/docs
+    devdeps: PIP_EXTRA_INDEX_URL = https://pypi.anaconda.org/astropy/simple https://pypi.anaconda.org/scientific-python-nightly-wheels/simple https://pypi.anaconda.org/liberfa/simple
 deps =
-    pytest-cov
-    # The devdeps factor is intended to be used to install the latest developer version.
-    # of key dependencies.
-    devdeps: git+https://github.com/glue-viz/glue.git
-# The following indicates which extras_require from setup.cfg will be installed
-# We use test and all so we don't install docs when we don't need it (as
-# opposed to dev).
 extras =
-    all
     tests
+commands_pre =
+    pip freeze --all --no-input
 commands =
-    {env:PYTEST_COMMAND} {posargs}
+    pytest \
+    -vvv \
+    -r fEs \
+    --pyargs glue_solar \
+    --cov-report=xml \
+    --cov=glue_solar \
+    --cov-config={toxinidir}/.coveragerc \
+    {toxinidir}/docs \
+    {posargs}
 
-[testenv:docs]
+[testenv:build_docs]
 changedir = docs
 description = Invoke sphinx-build to build the HTML docs
-# Be verbose about the extras rather than using dev for clarity
 extras =
     all
     docs
 commands =
-    sphinx-build -j auto --color -W --keep-going -b html -d _build/.doctrees . _build/html {posargs}
+    pip freeze --all --no-input
+    sphinx-build \
+    -j auto \
+    --color \
+    -W \
+    --keep-going \
+    -b html \
+    -d _build/.doctrees \
+    . \
+    _build/html \
+    {posargs}
     python -c 'import pathlib; print("Documentation available under file://\{0\}".format(pathlib.Path(r"{toxinidir}") / "docs" / "_build" / "index.html"))'
 
+[testenv:linkcheck]
+changedir = docs
+description = Invoke sphinx-build to check the URLS within the docs
+extras =
+    all
+    docs
+commands =
+    pip freeze --all --no-input
+    sphinx-build \
+    -qqq \
+    --color \
+    -b linkcheck \
+    . \
+    _build/html \
+    {posargs}
+
 [testenv:codestyle]
-skipsdist = true
 skip_install = true
 description = Run all style and file checks with pre-commit
 deps =