DESCRIPTION

Package: cummeRbund
Title: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data.
Version: 2.11.2
Date: 2013-04-22
Author: L. Goff, C. Trapnell, D. Kelley
Description: Allows for persistent storage, access, exploration, and manipulation of Cufflinks high-throughput sequencing data.  In addition, provides numerous plotting functions for commonly used visualizations.
Imports: methods, plyr, BiocGenerics, Biobase
Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite, ggplot2, reshape2, fastcluster, rtracklayer, Gviz
Suggests: cluster, plyr, NMFN, stringr, GenomicFeatures, GenomicRanges, rjson
Maintainer: Loyal A. Goff <lgoff@csail.mit.edu>
License: Artistic-2.0
Collate: 	AllGenerics.R
			AllClasses.R
			database-setup.R
			methods-CuffSet.R
			methods-CuffData.R
			methods-CuffDist.R
			methods-CuffGeneSet.R
			methods-CuffFeatureSet.R
			methods-CuffGene.R
			methods-CuffFeature.R
			tools.R
LazyLoad: yes
biocViews: HighThroughputSequencing, HighThroughputSequencingData, RNAseq, RNAseqData, GeneExpression, DifferentialExpression, Infrastructure, DataImport, DataRepresentation, Visualization, Bioinformatics, Clustering, MultipleComparisons, QualityControl