flax_test.yml

# This workflow will install Python dependencies, run tests and lint with a variety of Python versions
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

name: Flax - Test

on:
  push:
    branches:
      - main
      - 'test_*'
  pull_request:
    branches:
      - main

jobs:
  cancel-previous:
    name: Cancel Previous Runs
    runs-on: ubuntu-latest
    steps:
      - name: Cancel previous
        uses: styfle/cancel-workflow-action@0.10.1
        if: ${{github.ref != 'refs/head/main'}}
        with:
          access_token: ${{ github.token }}
  pre-commit:
    name: Test pre-commit hooks
    runs-on: ubuntu-latest
    steps:
      - uses: actions/checkout@v3
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: '3.10'
      - uses: pre-commit/action@v2.0.3
  commit-count:
    name: Check commit count
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v3
    # We allow at most 5 commits in a branch to ensure our CI doesn't break.
    - name: Check commit count in PR
      if: always()
      shell: bash
      run: |
        set -x
        # $GITHUB_REF is in format `refs/heads/<branch_name>`. We fetch it under
        # the name `commit-count` so we can refer to it below.
        # Do an unshallow fetch so we retrieve all commits (this is necessary
        # because ations/checkout@v2 fetches a shallow copy).
        git fetch origin --unshallow $GITHUB_REF:commit-count
        git fetch origin main
        diff=$(git rev-list --count origin/main...commit-count)
        # $GITHUB_REF adds an additional commit to the commit tree, so $diff is
        # one too high when executing this as a Github Action.
        if (( $diff > 6)); then
          echo "ERROR! More than 5 commits in PR -- please squash your commits."
          url=https://flax.readthedocs.io/en/latest/contributing.html#too-many-commits-in-a-pull-request
          echo "See $url for help on how to resolve this."
          exit 1
        fi
  test-import:
    name: Test import standalone
    runs-on: ubuntu-latest
    strategy:
      matrix:
        python-version: ['3.10', '3.11']
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - uses: astral-sh/setup-uv@v2
      with:
        uv-version: "0.3.0"
    - name: Install standalone dependencies only
      run: |
        uv sync --extra all
    - name: Test importing Flax
      run: |
        uv run python -c "import flax"
  tests:
    name: Run Tests
    needs: [cancel-previous, pre-commit, commit-count, test-import]
    runs-on: ubuntu-20.04-16core
    strategy:
      matrix:
        python-version: ['3.10', '3.11']
        test-type: [doctest, pytest, pytype, mypy]
        jax-version: [newest]
        exclude:
          - test-type: pytype
            python-version: '3.10'
          - test-type: mypy
            python-version: '3.11'
        include:
          - python-version: '3.10'
            test-type: pytest
            jax-version: '0.4.27'  # keep in sync with jax pin in pyproject.toml
    steps:
    - uses: actions/checkout@v3
    - name: Set up Python ${{ matrix.python-version }}
      id: setup_python
      uses: actions/setup-python@v4
      with:
        python-version: ${{ matrix.python-version }}
    - name: Setup uv
      uses: astral-sh/setup-uv@v2
      with:
        version: "0.3.0"

    - name: Install dependencies
      run: |
        uv sync --extra all --extra testing --extra docs
    - name: Install JAX
      run: |
        if [[ "${{ matrix.jax-version }}" == "newest" ]]; then
          uv pip install -U jax jaxlib
        else
          uv pip install "jax==${{ matrix.jax-version }}" "jaxlib==${{ matrix.jax-version }}"
        fi
    - name: Test with ${{ matrix.test-type }}
      run: |
        if [[ "${{ matrix.test-type }}" == "doctest" ]]; then
          uv run tests/run_all_tests.sh --only-doctest
        elif [[ "${{ matrix.test-type }}" == "pytest" ]]; then
          uv run tests/run_all_tests.sh --only-pytest
        elif [[ "${{ matrix.test-type }}" == "pytype" ]]; then
          uv run tests/run_all_tests.sh --only-pytype
        elif [[ "${{ matrix.test-type }}" == "mypy" ]]; then
          uv run tests/run_all_tests.sh --only-mypy
        else
          echo "Unknown test type: ${{ matrix.test-type }}"
          exit 1
        fi
    - name: Upload coverage to Codecov
      if: matrix.test-type == 'pytest'
      uses: codecov/codecov-action@v4
      env:
        CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}
      with:
        file: ./coverage.xml
    # The below step just reports the success or failure of tests as a "commit status".
    # This is needed for copybara integration.
    - name: Report success or failure as github status
      if: always()
      shell: bash
      run: |
        status="${{ job.status }}"
        lowercase_status=$(echo $status | tr '[:upper:]' '[:lower:]')
        curl -sS --request POST \
        --url https://api.github.com/repos/${{ github.repository }}/statuses/${{ github.sha }} \
        --header 'authorization: Bearer ${{ secrets.GITHUB_TOKEN }}' \
        --header 'content-type: application/json' \
        --data '{
           "state": "'$lowercase_status'",
           "target_url": "https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}",
           "description": "'$status'",
           "context": "github-actions/Build"
           }'