From c3f5619b827623a727503a20e78759a86d855f27 Mon Sep 17 00:00:00 2001 From: Ian Eaves Date: Thu, 31 Aug 2023 15:58:40 -0500 Subject: [PATCH] feature/gra-808-server-update-not-correctly-handling-sourced-metadata (#623) * Standardized JSON encoders * Standardized YAML encoders * Client library fixes for subscripted generics checks in older version versions * Fixed server metadata update logic * Standardized schema -> server model adapters * Fixed server YAML adapter --- grai-client/poetry.lock | 183 +- grai-client/pyproject.toml | 4 +- .../src/grai_client/endpoints/client.py | 6 +- .../src/grai_client/endpoints/utilities.py | 74 +- .../src/grai_client/endpoints/v1/get/utils.py | 10 +- grai-client/src/grai_client/update.py | 30 +- grai-client/tests/test_v1.py | 5 +- .../src/grai_source_flat_file/yaml.py | 0 grai-schemas/poetry.lock | 299 +- grai-schemas/pyproject.toml | 3 +- grai-schemas/src/grai_schemas/serializers.py | 138 +- grai-schemas/src/grai_schemas/utilities.py | 29 +- grai-schemas/src/grai_schemas/v1/edge.py | 31 + grai-schemas/src/grai_schemas/v1/merge.py | 37 + grai-schemas/src/grai_schemas/v1/mock.py | 44 +- grai-schemas/src/grai_schemas/v1/node.py | 33 +- grai-schemas/src/grai_schemas/v1/workspace.py | 6 +- grai-schemas/tests/test_serializers.py | 68 + grai-schemas/tests/test_utilities.py | 24 +- grai-schemas/tests/v1/test_v1_schemas.py | 16 + grai-server/app/__init__.py | 0 .../app/connections/adapters/schemas.py | 171 + .../app/connections/adapters/yaml_file.py | 97 +- .../migrations/0022_alter_connector_slug.py | 1 - .../migrations/0025_alter_connector_slug.py | 1 - grai-server/app/connections/task_helpers.py | 289 +- .../connections/tests/test_task_helpers.py | 286 +- .../app/connections/tests/test_tasks.py | 5 + .../app/installations/tests/test_github.py | 9 + ...e_display_name_alter_edge_name_and_more.py | 1 - ...alter_edge_metadata_alter_node_metadata.py | 27 + grai-server/app/lineage/models.py | 15 +- grai-server/app/poetry.lock | 485 +- grai-server/app/pyproject.toml | 5 +- .../app/the_guide/settings/__init__.py | 2 +- .../workspaces/sample_data/bigquery_edges.yml | 70 +- grai-server/poetry.lock | 4526 +---------------- grai-server/pyproject.toml | 2 +- poetry.lock | 171 +- 39 files changed, 1674 insertions(+), 5529 deletions(-) create mode 100644 grai-integrations/source-flat-file/src/grai_source_flat_file/yaml.py create mode 100644 grai-schemas/tests/test_serializers.py create mode 100644 grai-server/app/__init__.py create mode 100644 grai-server/app/connections/adapters/schemas.py create mode 100644 grai-server/app/lineage/migrations/0016_alter_edge_metadata_alter_node_metadata.py mode change 100755 => 100644 grai-server/app/pyproject.toml mode change 100644 => 120000 grai-server/poetry.lock diff --git a/grai-client/poetry.lock b/grai-client/poetry.lock index d0e1474b7..baf7e07ea 100644 --- a/grai-client/poetry.lock +++ b/grai-client/poetry.lock @@ -1,25 +1,25 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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{file = "wheel-0.41.0-py3-none-any.whl", hash = "sha256:7e9be3bbd0078f6147d82ed9ed957e323e7708f57e134743d2edef3a7b7972a9"}, - {file = "wheel-0.41.0.tar.gz", hash = "sha256:55a0f0a5a84869bce5ba775abfd9c462e3a6b1b7b7ec69d72c0b83d673a5114d"}, + {file = "wheel-0.41.2-py3-none-any.whl", hash = "sha256:75909db2664838d015e3d9139004ee16711748a52c8f336b52882266540215d8"}, + {file = "wheel-0.41.2.tar.gz", hash = "sha256:0c5ac5ff2afb79ac23ab82bab027a0be7b5dbcf2e54dc50efe4bf507de1f7985"}, ] [package.extras] @@ -1229,4 +1176,4 @@ test = ["pytest (>=6.0.0)", "setuptools (>=65)"] [metadata] lock-version = "2.0" python-versions = "^3.8" -content-hash = "bf959833e2f1672803d3f22cd9189f68ef64d5b34597b7c845f84248bda096bc" +content-hash = "12a0f5958fae3a40be8a408933146ef24dcf39e28fa1a10281971bc54890dee8" diff --git a/grai-client/pyproject.toml b/grai-client/pyproject.toml index 49739e99e..90d656994 100644 --- a/grai-client/pyproject.toml +++ b/grai-client/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "grai-client" -version = "0.3.1" +version = "0.3.2" description = "" authors = ["Ian Eaves "] license = "Elastic-2.0" @@ -18,7 +18,7 @@ pydantic = "^1.9.1" requests = "^2.28.1" multimethod = "^1.9" pyyaml = "^6.0" -grai-schemas = "^0.2.0" +grai-schemas = "^0.2.4" httpx = {extras = ["http2"], version = "^0.24.0"} brotli = "^1.0.9" tqdm = "^4.65.0" diff --git a/grai-client/src/grai_client/endpoints/client.py b/grai-client/src/grai_client/endpoints/client.py index 91133e6ce..d5b705449 100644 --- a/grai-client/src/grai_client/endpoints/client.py +++ b/grai-client/src/grai_client/endpoints/client.py @@ -21,7 +21,7 @@ import httpx from furl import furl -from grai_schemas.base import Edge, Node +from grai_schemas.base import Edge, Node, SourcedEdge, SourcedNode from httpx import Auth, BasicAuth, QueryParams, Response from multimethod import multimethod from pydantic import BaseModel, SecretStr @@ -650,8 +650,8 @@ def type_segmentation( PRIORITY_ORDER_MAP = { - "post": (Node, Edge), - "delete": (Edge, Node), + "post": (Node, SourcedNode, Edge, SourcedEdge), + "delete": (Edge, SourcedEdge, Node, SourcedNode), "patch": (), "get": (), } diff --git a/grai-client/src/grai_client/endpoints/utilities.py b/grai-client/src/grai_client/endpoints/utilities.py index 789abf0cf..043f8286c 100644 --- a/grai-client/src/grai_client/endpoints/utilities.py +++ b/grai-client/src/grai_client/endpoints/utilities.py @@ -21,10 +21,10 @@ ) from uuid import UUID -import orjson -from grai_schemas.generics import GraiBaseModel, MalformedMetadata +from grai_schemas.generics import MalformedMetadata +from grai_schemas.serializers import dump_json, load_json from httpx import Response -from pydantic import BaseModel, ValidationError +from pydantic import ValidationError from requests import RequestException from grai_client.errors import InvalidResponseError, ObjectNotFoundError @@ -110,56 +110,6 @@ def response_status_check(resp: Response) -> Response: raise RequestException(message) -def orjson_defaults(obj: Any) -> Any: - """ - - Args: - obj (Any): - - Returns: - - Raises: - - """ - if isinstance(obj, set): - return list(obj) - elif isinstance(obj, (pathlib.PosixPath, pathlib.WindowsPath)): - return str(obj) - elif isinstance(obj, GraiBaseModel): - return obj.json() - elif isinstance(obj, BaseModel): - return obj.dict() - else: - raise Exception(f"No supported JSON serialization format for objects of type {type(obj)}") - - -class GraiEncoder(json.JSONEncoder): - """Needed for the base python json implementation""" - - def default(self, obj: Any) -> Any: - """ - - Args: - obj (Any): - - Returns: - - Raises: - - """ - if isinstance(obj, (UUID, pathlib.PosixPath, pathlib.WindowsPath)): - return str(obj) - elif isinstance(obj, (GraiBaseModel, BaseModel)): - return obj.dict() - elif isinstance(obj, datetime.date): - # datetime is a date but date is not a datetime - # TODO: TZ management - return obj.isoformat() - elif isinstance(obj, set): - return list(obj) - return json.JSONEncoder.default(self, obj) - - def serialize_obj(obj: Dict) -> bytes: """ @@ -171,23 +121,7 @@ def serialize_obj(obj: Dict) -> bytes: Raises: """ - json_obj = orjson.dumps(obj, default=orjson_defaults) - return json_obj - - -def serialize_obj_fallback(obj: Dict) -> str: - """ - - Args: - obj (Dict): - - Returns: - - Raises: - - """ - json_obj = json.dumps(obj, cls=GraiEncoder) - return json_obj + return dump_json(obj) def add_query_params(url: str, params: dict) -> str: diff --git a/grai-client/src/grai_client/endpoints/v1/get/utils.py b/grai-client/src/grai_client/endpoints/v1/get/utils.py index 45f668399..aca5ba63d 100644 --- a/grai-client/src/grai_client/endpoints/v1/get/utils.py +++ b/grai-client/src/grai_client/endpoints/v1/get/utils.py @@ -1,4 +1,4 @@ -from typing import Any, Dict, Tuple, TypeVar, Union +from typing import Any, Dict, Tuple, TypeVar, Union, get_args from grai_schemas.v1 import EdgeV1, NodeV1, SourcedEdgeV1, SourcedNodeV1 from grai_schemas.v1.edge import EdgeSpec, SourcedEdgeSpec @@ -37,6 +37,10 @@ def source_edge_builder(resp: Dict[str, Any]) -> SourcedEdgeV1: return SourcedEdgeV1.from_spec(resp) +source_edge_spec_args = get_args(SourcedEdgeSpec) +source_node_spec_args = get_args(SourcedNodeSpec) + + def get_source_and_spec( client: ClientV1, grai_type: Union[SourcedNodeSpec, SourcedEdgeSpec] ) -> Tuple[SourceSpec, Union[NodeSpec, EdgeSpec]]: @@ -44,9 +48,9 @@ def get_source_and_spec( if source.id is None: source = get_is_unique(client, source).spec - if isinstance(grai_type, SourcedEdgeSpec): + if isinstance(grai_type, source_edge_spec_args): label = "Edge" - elif isinstance(grai_type, SourcedNodeSpec): + elif isinstance(grai_type, source_node_spec_args): label = "Node" else: raise ValueError(f"Unexpected type: {type(grai_type)}") diff --git a/grai-client/src/grai_client/update.py b/grai-client/src/grai_client/update.py index 661323ff3..7d365d6f7 100644 --- a/grai-client/src/grai_client/update.py +++ b/grai-client/src/grai_client/update.py @@ -1,5 +1,6 @@ from typing import Dict, List, Optional, Tuple, TypeVar, Union +from grai_schemas.utilities import compute_graph_changes from grai_schemas.v1.edge import EdgeV1, SourcedEdgeV1 from grai_schemas.v1.node import NodeV1, SourcedNodeV1 from grai_schemas.v1.source import SourceSpec, SourceV1 @@ -9,33 +10,6 @@ T = TypeVar("T", SourcedNodeV1, SourcedEdgeV1) -def compute_graph_changes(items: List[T], active_items: List[T]) -> Tuple[List[T], List[T], List[T]]: - """ - Args: - items: - active_items: - - Returns: - - Raises: - - """ - - active_item_map = {hash(item.spec): item for item in active_items} - item_map: Dict[int, T] = {hash(item.spec): item for item in items} - - new_item_keys = item_map.keys() - active_item_map.keys() - deleted_source_item_keys = active_item_map.keys() - item_map.keys() - updated_item_keys = item_map.keys() - new_item_keys - - deleted_from_sources = [active_item_map[k] for k in deleted_source_item_keys] - - new_items: List[T] = [item_map[k] for k in new_item_keys] - updated_items = [item_map[k] for k in updated_item_keys if item_map[k] != active_item_map[k]] - - return new_items, updated_items, deleted_from_sources - - def update( client: BaseClient, items: List[Union[SourcedNodeV1, SourcedEdgeV1]], @@ -63,7 +37,7 @@ def update( raise ValueError( f"All items provided to `update` must be of the same type. Instead got a mix of types:" f" {item_types}" ) - if any(isinstance(item, Union[NodeV1, EdgeV1]) for item in items): + if any(isinstance(item, (NodeV1, EdgeV1)) for item in items): raise NotImplementedError( f"Update is not supported for NodeV1 or EdgeV1. Please use SourcedNodeV1 or SourcedEdgeV1 instead." ) diff --git a/grai-client/tests/test_v1.py b/grai-client/tests/test_v1.py index 8e23bf07a..0419a9c55 100644 --- a/grai-client/tests/test_v1.py +++ b/grai-client/tests/test_v1.py @@ -1,4 +1,5 @@ from functools import cache +from typing import get_args from uuid import UUID, uuid4 import pytest @@ -234,7 +235,7 @@ class TestNodesV1: def test_get_nodes(client): nodes = client.get("node") assert all(isinstance(node, NodeV1) for node in nodes) - assert all(isinstance(node.spec.metadata, MetadataV1) for node in nodes) + assert all(isinstance(node.spec.metadata, get_args(MetadataV1)) for node in nodes) @classmethod def test_post_node(cls, client, mock_v1): @@ -315,7 +316,7 @@ class TestEdgesV1: def test_get_edges(client): result = client.get("edge") assert all(isinstance(edge, EdgeV1) for edge in result) - assert all(isinstance(edge.spec.metadata, MetadataV1) for edge in result) + assert all(isinstance(edge.spec.metadata, get_args(MetadataV1)) for edge in result) @staticmethod def test_post_edge(client, mock_v1): diff --git a/grai-integrations/source-flat-file/src/grai_source_flat_file/yaml.py b/grai-integrations/source-flat-file/src/grai_source_flat_file/yaml.py new file mode 100644 index 000000000..e69de29bb diff --git a/grai-schemas/poetry.lock b/grai-schemas/poetry.lock index 6f0aa83ef..1aa7a0f3f 100644 --- a/grai-schemas/poetry.lock +++ b/grai-schemas/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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"coverage-enable-subprocess (>=1)", "flaky (>=3.7)", "packaging (>=23.1)", "pytest (>=7.4)", "pytest-env (>=0.8.2)", "pytest-freezer (>=0.4.8)", "pytest-mock (>=3.11.1)", "pytest-randomly (>=3.12)", "pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] [metadata] lock-version = "2.0" diff --git a/grai-schemas/pyproject.toml b/grai-schemas/pyproject.toml index 87ca07f9d..d177abf5a 100644 --- a/grai-schemas/pyproject.toml +++ b/grai-schemas/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "grai_schemas" -version = "0.2.2" +version = "0.2.4" description = "" authors = ["Ian Eaves ", "Edward Louth "] license = "Elastic-2.0" @@ -15,7 +15,6 @@ python = "^3.8" pydantic = "^1.10.11" multimethod = "^1.9.1" polyfactory = "^2.6.1" -orjson = "^3.9.2" [tool.poetry.group.dev.dependencies] black = "^22.12.0" diff --git a/grai-schemas/src/grai_schemas/serializers.py b/grai-schemas/src/grai_schemas/serializers.py index 6ce60d088..2b164a642 100644 --- a/grai-schemas/src/grai_schemas/serializers.py +++ b/grai-schemas/src/grai_schemas/serializers.py @@ -1,32 +1,134 @@ +import json +import os import pathlib -from typing import Any +from datetime import date, datetime, timezone +from enum import Enum +from json import JSONEncoder +from pathlib import Path +from typing import ( + IO, + Any, + Callable, + Dict, + Iterable, + List, + Optional, + Sequence, + Type, + Union, +) +from uuid import UUID -import orjson +import yaml +from pydantic import BaseModel from pydantic.json import pydantic_encoder -def orjson_defaults(obj: Any) -> Any: - """ +def to_ecma262(dt: datetime) -> str: + # compatible with Django defaults + dt_utc = dt.astimezone(timezone.utc) + return dt_utc.strftime("%Y-%m-%dT%H:%M:%S.%f")[:-3] + "Z" - Args: - obj (Any): - Returns: +class GraiEncoder(JSONEncoder): + def default(self, obj: Any): + if isinstance(obj, Enum): + return obj.value + elif isinstance(obj, BaseModel): + return obj.dict() + elif isinstance(obj, (UUID, pathlib.PosixPath, pathlib.WindowsPath)): + return str(obj) + elif isinstance(obj, datetime): + return to_ecma262(obj) + elif isinstance(obj, date): + return obj.strftime("%Y-%m-%d") + elif isinstance(obj, set): + return list(obj) - Raises: + return super().default(obj) - """ - if isinstance(obj, set): - return list(obj) - elif isinstance(obj, (pathlib.PosixPath, pathlib.WindowsPath)): - return str(obj) + +encoder = GraiEncoder() + + +def dump_json(v, *, default: Optional[Callable] = None) -> str: + if default is None: + return json.dumps(v, cls=GraiEncoder) else: - raise Exception(f"No supported JSON serialization format for objects of type {type(obj)}") + return json.dumps(v, default=default, cls=GraiEncoder) + + +def load_json(v): + return json.loads(v) + + +class GraiYamlSerializer: + @staticmethod + def load(stream: Union[str, Path, IO]) -> Union[Dict, List[Dict]]: + """ + + Args: + stream: + + Returns: + + Raises: + + """ + if isinstance(stream, Path): + with open(stream, "r") as file: + result = list(yaml.safe_load_all(file)) + elif isinstance(stream, str) and (stream.endswith((".yml", ".yaml")) or os.path.exists(stream)): + with open(stream, "r") as file: + result = list(yaml.safe_load_all(file)) + else: + result = list(yaml.safe_load_all(stream)) + + if len(result) == 1: + result = result[0] + + return result + + @classmethod + def dump(cls, item: Any, stream: Optional[Union[IO, str, Path]] = None) -> str: + """ + + Args: + item: + stream: + + Returns: + + Raises: + + """ + # re-use the json serializers for compatability + prepped_data = cls.prep_data(item) + dumper = yaml.safe_dump_all if isinstance(item, Sequence) else yaml.safe_dump + + if stream is None: + result = dumper(prepped_data) + elif isinstance(stream, (str, Path)): + with open(stream, "w") as file: + result = dumper(prepped_data, file) + else: + result = dumper(prepped_data, stream) + + return result + + @staticmethod + def prep_data(data: Any) -> Union[str, List[str]]: + """ + Args: + data (Any): -def dump_json(v, *, default): - return orjson.dumps(v, default=default, option=orjson.OPT_NON_STR_KEYS).decode() + Returns: + Raises: -def load_json(*args, **kwargs): - return orjson.loads(*args, **kwargs) + """ + if isinstance(data, Sequence): + return list(load_json(dump_json(item)) for item in data) + else: + return load_json(dump_json(data)) diff --git a/grai-schemas/src/grai_schemas/utilities.py b/grai-schemas/src/grai_schemas/utilities.py index aed1b1d6e..7c914fe9e 100644 --- a/grai-schemas/src/grai_schemas/utilities.py +++ b/grai-schemas/src/grai_schemas/utilities.py @@ -1,7 +1,7 @@ from __future__ import annotations import uuid -from typing import TYPE_CHECKING, Any, Dict, Generic, TypeVar, Union +from typing import TYPE_CHECKING, Any, Dict, Generic, List, Tuple, TypeVar, Union from multimethod import multimethod from pydantic import BaseModel @@ -193,3 +193,30 @@ def merge_models(a: T, b: T) -> T: a_type = type(a) merged = merge(a, b) return a_type(**merged) + + +def compute_graph_changes(items: List[T], active_items: List[T]) -> Tuple[List[T], List[T], List[T]]: + """ + Args: + items: + active_items: + + Returns: + + Raises: + + """ + + active_item_map = {hash(item.spec): item for item in active_items} + item_map: Dict[int, T] = {hash(item.spec): item for item in items} + + new_item_keys = item_map.keys() - active_item_map.keys() + deleted_source_item_keys = active_item_map.keys() - item_map.keys() + updated_item_keys = item_map.keys() - new_item_keys + + deleted_from_sources = [active_item_map[k] for k in deleted_source_item_keys] + + new_items: List[T] = [item_map[k] for k in new_item_keys] + updated_items = [item_map[k] for k in updated_item_keys if item_map[k] != active_item_map[k]] + + return new_items, updated_items, deleted_from_sources diff --git a/grai-schemas/src/grai_schemas/v1/edge.py b/grai-schemas/src/grai_schemas/v1/edge.py index 61d9515a2..de12bc3d7 100644 --- a/grai-schemas/src/grai_schemas/v1/edge.py +++ b/grai-schemas/src/grai_schemas/v1/edge.py @@ -57,12 +57,40 @@ class NamedSourceSpec(EdgeNamedID, BaseSpec, SourcedEdgeSpecMetadataMixin, DataS pass + def to_edge(self) -> "NamedSpec": + """ + + Returns: + + """ + values = self.dict(exclude={"data_source", "metadata"}) + values["data_sources"] = [self.data_source] + values["metadata"] = { + "grai": self.metadata.grai, + "sources": {self.data_source.name: self.metadata}, + } + return NamedSpec(**values) + class IDSourceSpec(EdgeUuidID, BaseSpec, SourcedEdgeSpecMetadataMixin, DataSourceMixin): """ """ pass + def to_edge(self) -> "IDSpec": + """ + + Returns: + + """ + values = self.dict(exclude={"data_source", "metadata"}) + values["data_sources"] = [self.data_source] + values["metadata"] = { + "grai": self.metadata.grai, + "sources": {self.data_source.name: self.metadata}, + } + return IDSpec(**values) + SourcedEdgeSpec = Union[IDSourceSpec, NamedSourceSpec] @@ -89,6 +117,9 @@ def from_spec(cls, spec_dict: Dict) -> "SourcedEdgeV1": def __hash__(self): return hash(self.spec) + def to_edge(self) -> "EdgeV1": + return EdgeV1(version="v1", type="Edge", spec=self.spec.to_edge()) + class EdgeSpecMetadataMixin(GraiBaseModel): metadata: EdgeMetadataV1 = EdgeMetadataV1(grai=GenericEdgeMetadataV1(edge_type="Generic"), sources={}) diff --git a/grai-schemas/src/grai_schemas/v1/merge.py b/grai-schemas/src/grai_schemas/v1/merge.py index 9466269ca..7285300c6 100644 --- a/grai-schemas/src/grai_schemas/v1/merge.py +++ b/grai-schemas/src/grai_schemas/v1/merge.py @@ -1,9 +1,12 @@ +import copy from typing import Any, Dict, Optional, Union from grai_schemas.generics import MalformedMetadata, Metadata from grai_schemas.utilities import merge +from grai_schemas.v1.edge import EdgeSpec, EdgeV1, SourcedEdgeSpec, SourcedEdgeV1 from grai_schemas.v1.metadata.edges import BaseEdgeMetadataV1 from grai_schemas.v1.metadata.nodes import BaseNodeMetadataV1 +from grai_schemas.v1.node import NodeSpec, NodeV1, SourcedNodeSpec, SourcedNodeV1 MetadataType = Union[BaseNodeMetadataV1, BaseEdgeMetadataV1] @@ -44,3 +47,37 @@ def merge_grai_edge_v1_metadata(metadata: BaseEdgeMetadataV1, other_metadata: Ba new_metadata = merge(dict(metadata), dict(other_metadata)) new_metadata["tags"] = merge_tags(metadata.tags, other_metadata.tags) return BaseEdgeMetadataV1(**new_metadata) + + +@merge.register +def merge_node_sourced_node(node: NodeV1, source_node: SourcedNodeV1) -> NodeV1: + """ """ + new_node = node.copy() + new_node.spec = merge(node.spec, source_node.spec) + return new_node + + +@merge.register +def merge_edge_sourced_edge(edge: EdgeV1, source_edge: SourcedEdgeV1) -> EdgeV1: + """ """ + new_edge = edge.copy() + new_edge.spec = merge(edge.spec, source_edge.spec) + return new_edge + + +@merge.register +def merge_grai_node_into_node_metadata(spec: NodeSpec, source_spec: SourcedNodeSpec) -> NodeSpec: + """ """ + new_spec = copy.deepcopy(spec) + new_spec.metadata.grai = merge(new_spec.metadata.grai, source_spec.metadata.grai) + new_spec.metadata.sources[source_spec.data_source.name] = source_spec.metadata + return new_spec + + +@merge.register +def merge_grai_edge_into_edge_metadata(spec: EdgeSpec, source_spec: SourcedEdgeSpec) -> NodeSpec: + """ """ + new_spec = copy.deepcopy(spec) + new_spec.metadata.grai = merge(new_spec.metadata.grai, source_spec.metadata.grai) + new_spec.metadata.sources[source_spec.data_source.name] = source_spec.metadata + return new_spec diff --git a/grai-schemas/src/grai_schemas/v1/mock.py b/grai-schemas/src/grai_schemas/v1/mock.py index 585833b71..1415a2ff6 100644 --- a/grai-schemas/src/grai_schemas/v1/mock.py +++ b/grai-schemas/src/grai_schemas/v1/mock.py @@ -150,31 +150,31 @@ def __init__(self, workspace=None, **kwargs): self.workspace = workspace self.kwargs = kwargs - def node(self, **kwargs): + def node(self, **kwargs) -> NodeV1: """ """ kwargs.setdefault("spec", self.named_node_spec()) return NodeFactory.build(factory_use_construct=True, **kwargs) - def named_node_spec(self, **kwargs): + def named_node_spec(self, **kwargs) -> NamedSpec: """ """ base_spec = NamedNodeSpecFactory.build(factory_use_construct=True, **kwargs) if self.workspace: base_spec.workspace = self.workspace.id return base_spec - def id_node_spec(self, **kwargs): + def id_node_spec(self, **kwargs) -> IDSpec: """ """ base_spec = IDNodeSpecFactory.build(factory_use_construct=True, **kwargs) if self.workspace: base_spec.workspace = self.workspace.id return base_spec - def sourced_node(self, **kwargs): + def sourced_node(self, **kwargs) -> SourcedNodeV1: """ """ kwargs.setdefault("spec", self.named_source_node_spec()) return SourcedNodeFactory.build(factory_use_construct=True, **kwargs) - def named_source_node_spec(self, **kwargs): + def named_source_node_spec(self, **kwargs) -> NamedSourceSpec: """ """ base_spec = NamedSourceNodeSpecFactory.build(factory_use_construct=True, **kwargs) @@ -182,7 +182,7 @@ def named_source_node_spec(self, **kwargs): base_spec.workspace = self.workspace.id return base_spec - def id_source_node_spec(self, **kwargs): + def id_source_node_spec(self, **kwargs) -> IDSourceSpec: """ """ base_spec = IDSourceNodeSpecFactory.build(factory_use_construct=True, **kwargs) @@ -202,8 +202,8 @@ class NamedEdgeSpecFactory(ModelFactory[NamedEdgeSpec]): @classmethod def metadata(cls, data_sources: List[SourceSpec]) -> EdgeMetadataV1: """ """ - sources = {source.name: GraiEdgeMetadataV1Factory.build() for source in data_sources} - return EdgeMetadataV1Factory.build(sources=sources) + sources = {source.name: GraiEdgeMetadataV1Factory.build(factory_use_construct=True) for source in data_sources} + return EdgeMetadataV1Factory.build(sources=sources, factory_use_construct=True) @post_generated @classmethod @@ -245,17 +245,17 @@ class MockEdge: def __init__(self, workspace=None, **kwargs): self.workspace = workspace - def sourced_edge(self, **kwargs): + def sourced_edge(self, **kwargs) -> SourcedEdgeV1: """ """ kwargs.setdefault("spec", self.named_source_edge_spec()) return SourcedEdgeFactory.build(factory_use_construct=True, **kwargs) - def edge(self, **kwargs): + def edge(self, **kwargs) -> EdgeV1: """ """ kwargs.setdefault("spec", self.named_edge_spec()) return EdgeFactory.build(factory_use_construct=True, **kwargs) - def named_edge_spec(self, **kwargs): + def named_edge_spec(self, **kwargs) -> NamedEdgeSpec: """ """ base_spec = NamedEdgeSpecFactory.build(factory_use_construct=True, **kwargs) @@ -264,7 +264,7 @@ def named_edge_spec(self, **kwargs): return base_spec - def id_edge_spec(self, **kwargs): + def id_edge_spec(self, **kwargs) -> EdgeIDSpec: """ """ base_spec = IDEdgeSpecFactory.build(factory_use_construct=True, **kwargs) @@ -273,7 +273,7 @@ def id_edge_spec(self, **kwargs): return base_spec - def named_source_edge_spec(self, **kwargs): + def named_source_edge_spec(self, **kwargs) -> NamedEdgeSourceSpec: """ """ base_spec = NamedEdgeSourceSpecFactory.build(factory_use_construct=True, **kwargs) @@ -282,7 +282,7 @@ def named_source_edge_spec(self, **kwargs): return base_spec - def id_source_edge_spec(self, **kwargs): + def id_source_edge_spec(self, **kwargs) -> EdgeIDSourceSpec: """ """ base_spec = IDEdgeSourceSpecFactory.build(factory_use_construct=True, **kwargs) @@ -306,22 +306,22 @@ class OrganisationFactory(ModelFactory[OrganisationV1]): class MockOrganisation: @classmethod - def organisation(cls, **kwargs): + def organisation(cls, **kwargs) -> OrganisationV1: """ """ return OrganisationFactory.build(factory_use_construct=True, **kwargs) @classmethod - def organisation_spec(cls, **kwargs): + def organisation_spec(cls, **kwargs) -> OrganisationSpec: """ """ return OrganisationSpecFactory.build(factory_use_construct=True, **kwargs) @classmethod - def organization(cls, **kwargs): + def organization(cls, **kwargs) -> OrganisationV1: """ """ return cls.organisation(**kwargs) @classmethod - def organization_spec(cls, **kwargs): + def organization_spec(cls, **kwargs) -> OrganisationSpec: """ """ return cls.organisation_spec(**kwargs) @@ -349,12 +349,12 @@ class MockWorkspace: def __init__(self, organisation=None): self.organisation = organisation - def workspace(self, **kwargs): + def workspace(self, **kwargs) -> WorkspaceV1: """ """ kwargs.setdefault("spec", self.workspace_spec()) return WorkspaceFactory.build(factory_use_construct=True, **kwargs) - def workspace_spec(self, **kwargs): + def workspace_spec(self, **kwargs) -> WorkspaceSpec: """ """ if self.organisation: kwargs.setdefault("organisation", self.organisation) @@ -377,12 +377,12 @@ class MockSource: def __init__(self, workspace=None): self.workspace = workspace - def source(self, **kwargs): + def source(self, **kwargs) -> SourceV1: """ """ kwargs.setdefault("spec", self.source_spec()) return SourceFactory.build(factory_use_construct=True, **kwargs) - def source_spec(self, **kwargs): + def source_spec(self, **kwargs) -> SourceSpec: """ """ if self.workspace: kwargs.setdefault("workspace", self.workspace) diff --git a/grai-schemas/src/grai_schemas/v1/node.py b/grai-schemas/src/grai_schemas/v1/node.py index dab8624fe..e430cd050 100644 --- a/grai-schemas/src/grai_schemas/v1/node.py +++ b/grai-schemas/src/grai_schemas/v1/node.py @@ -55,13 +55,34 @@ def validate_metadata(cls, v: Optional[Union[Dict, GraiNodeMetadataV1]]) -> Grai class NamedSourceSpec(NodeNamedID, BaseSpec, SourcedNodeSpecMetadataMixin, DataSourceMixin): """ """ - pass + def to_node(self) -> "NamedSpec": + """ + + Returns: + + """ + values = self.dict(exclude={"metadata", "data_source"}) + values["data_sources"] = [self.data_source] + values["metadata"] = {"grai": self.metadata.grai, "sources": {self.data_source.name: self.metadata}} + return NamedSpec(**values) class IDSourceSpec(NodeUuidID, BaseSpec, SourcedNodeSpecMetadataMixin, DataSourceMixin): """ """ - pass + def to_node(self) -> "IDSpec": + """ + + Returns: + + """ + values = self.dict() + values["data_sources"] = [values.pop("data_source")] + values["metadata"] = { + "grai": values["metadata"]["grai"], + "sources": {self.data_source.name: values["metadata"]}, + } + return IDSpec(**values) SourcedNodeSpec = Union[IDSourceSpec, NamedSourceSpec] @@ -89,6 +110,14 @@ def from_spec(cls, spec_dict: Dict) -> "SourcedNodeV1": def __hash__(self): return hash(self.spec) + def to_node(self) -> "NodeV1": + """ + + Returns: + + """ + return NodeV1(version="v1", type="Node", spec=self.spec.to_node()) + class NodeSpecMetadataMixin(GraiBaseModel): metadata: NodeMetadataV1 = NodeMetadataV1(grai=GenericNodeMetadataV1(node_type="Generic"), sources={}) diff --git a/grai-schemas/src/grai_schemas/v1/workspace.py b/grai-schemas/src/grai_schemas/v1/workspace.py index c996ff32b..026923073 100644 --- a/grai-schemas/src/grai_schemas/v1/workspace.py +++ b/grai-schemas/src/grai_schemas/v1/workspace.py @@ -3,7 +3,7 @@ from uuid import UUID from grai_schemas.generics import GraiBaseModel -from grai_schemas.v1.organization import OrganisationSpec +from grai_schemas.v1.organization import OrganisationSpec, OrganisationV1 from pydantic import Field, validator @@ -29,6 +29,8 @@ def organization(self): def validate_organisation(cls, v: Union[UUID, str, Dict, OrganisationSpec]) -> Union[UUID, OrganisationSpec]: if isinstance(v, (OrganisationSpec, UUID)): return v + elif isinstance(v, OrganisationV1): + return v.spec elif isinstance(v, dict): return OrganisationSpec(**v) elif isinstance(v, str): @@ -39,7 +41,7 @@ def validate_organisation(cls, v: Union[UUID, str, Dict, OrganisationSpec]) -> U return OrganisationSpec(name=v) else: message = ( - f"Invalid value for organisation: Receive {v} which is of type {type(v)}. You might have meant " + f"Invalid value for organisation: Received {v} which is of type {type(v)}. You might have meant " f"to provide a UUID for the organisation, or a string containing the name of the organisation?" ) raise ValueError(message) diff --git a/grai-schemas/tests/test_serializers.py b/grai-schemas/tests/test_serializers.py new file mode 100644 index 000000000..156bc93b2 --- /dev/null +++ b/grai-schemas/tests/test_serializers.py @@ -0,0 +1,68 @@ +import tempfile +from pathlib import Path + +from grai_schemas.serializers import GraiYamlSerializer, dump_json, load_json + + +class TestGraiYamlSerializer: + """ """ + + encoder = GraiYamlSerializer() + + def test_dump(self): + result = self.encoder.dump({"a": 1}) + assert isinstance(result, str) + assert result == "a: 1\n" + + def test_dump_to_file(self): + """create a file and test that it can be dumped""" + with tempfile.NamedTemporaryFile("w+") as file: + self.encoder.dump({"a": 1}, file) + file.flush() + file.seek(0) + assert file.read() == "a: 1\n" + + def test_dump_sequence(self): + result = self.encoder.dump([{"a": 1}, {"b": 2}]) + assert isinstance(result, str) + assert result == "a: 1\n---\nb: 2\n" + + def test_dump_sequence_to_file(self): + """create a file and test that it can be dumped""" + with tempfile.NamedTemporaryFile("w+") as file: + self.encoder.dump([{"a": 1}, {"b": 2}], file) + file.flush() + file.seek(0) + assert file.read() == "a: 1\n---\nb: 2\n" + + def test_load_from_file_string(self): + with tempfile.NamedTemporaryFile() as file: + file.write(b"a: 1\n") + file.flush() + result = self.encoder.load(file.name) + assert result == {"a": 1} + + def test_load_from_path(self): + with tempfile.NamedTemporaryFile() as file: + file.write(b"a: 1\n") + file.flush() + result = self.encoder.load(Path(file.name)) + assert result == {"a": 1} + + def test_load_from_file_io(self): + with tempfile.NamedTemporaryFile() as file: + file.write(b"a: 1\n") + file.flush() + file.seek(0) + result = self.encoder.load(file) + assert result == {"a": 1} + + def test_load_from_raw_string(self): + result = self.encoder.load("a: 1\n") + assert result == {"a": 1} + + def test_roundtrip(self): + """test that a roundtrip from dump to load works""" + data = [{"a": 1}, {"b": 2, "a": 3}] + result = self.encoder.load(self.encoder.dump(data)) + assert result == data diff --git a/grai-schemas/tests/test_utilities.py b/grai-schemas/tests/test_utilities.py index 33b63b095..590670937 100644 --- a/grai-schemas/tests/test_utilities.py +++ b/grai-schemas/tests/test_utilities.py @@ -1,6 +1,8 @@ +from copy import deepcopy + import pytest from grai_schemas.utilities import merge -from grai_schemas.v1 import EdgeV1, NodeV1 +from grai_schemas.v1 import EdgeV1, NodeV1, SourcedEdgeV1, SourcedNodeV1 from grai_schemas.v1.metadata.edges import BaseEdgeMetadataV1 from grai_schemas.v1.metadata.metadata import ( EdgeMetadataV1, @@ -202,3 +204,23 @@ def test_merge_edge_metadata_tags(self): assert len(c.tags) == 4 assert len(set(c.tags)) == 4 assert {"1", "2", "3", "4"} == set(c.tags) + + def test_merge_source_into_node(self, mock_v1): + a = mock_v1.node.node() + b = mock_v1.node.sourced_node() + expected_metadata = deepcopy(a.spec.metadata) + expected_metadata.sources[b.spec.data_source.name] = b.spec.metadata + expected_metadata.grai = merge(expected_metadata.grai, b.spec.metadata.grai) + + expected_node = NodeV1.from_spec({**a.spec.dict(), "metadata": expected_metadata}) + merged_node = merge(a, b) + assert expected_node == merged_node + + def test_merge_source_into_edge(self, mock_v1): + a = mock_v1.edge.edge() + b = mock_v1.edge.sourced_edge() + expected_metadata = deepcopy(a.spec.metadata) + expected_metadata.sources[b.spec.data_source.name] = b.spec.metadata + expected_metadata.grai = merge(expected_metadata.grai, b.spec.metadata.grai) + + assert merge(a, b) == EdgeV1.from_spec({**a.spec.dict(), "metadata": expected_metadata}) diff --git a/grai-schemas/tests/v1/test_v1_schemas.py b/grai-schemas/tests/v1/test_v1_schemas.py index c7532e883..73358e34d 100644 --- a/grai-schemas/tests/v1/test_v1_schemas.py +++ b/grai-schemas/tests/v1/test_v1_schemas.py @@ -276,3 +276,19 @@ def test_dumps_to_json(self, mock_v1): source_json = source.json() assert isinstance(source_json, str) assert source == SourceV1.parse_raw(source_json) + + +class TestSourcedNodeV1: + @staticmethod + def test_to_node(mock_v1): + sourced_node = mock_v1.node.sourced_node() + node = sourced_node.to_node() + assert isinstance(node, NodeV1) + + +class TestSourcedEdgeV1: + @staticmethod + def test_to_node(mock_v1): + sourced_node = mock_v1.edge.sourced_edge() + node = sourced_node.to_edge() + assert isinstance(node, EdgeV1) diff --git a/grai-server/app/__init__.py b/grai-server/app/__init__.py new file mode 100644 index 000000000..e69de29bb diff --git a/grai-server/app/connections/adapters/schemas.py b/grai-server/app/connections/adapters/schemas.py new file mode 100644 index 000000000..e4dd42719 --- /dev/null +++ b/grai-server/app/connections/adapters/schemas.py @@ -0,0 +1,171 @@ +from grai_schemas.v1.source import SourceV1, SourceSpec +from grai_schemas.v1.node import NodeSpec, SourcedNodeSpec, NodeV1, SourcedNodeV1 +from grai_schemas.v1.edge import EdgeSpec, SourcedEdgeSpec, EdgeV1, SourcedEdgeV1 +from grai_schemas.v1.workspace import WorkspaceSpec, WorkspaceV1 +from grai_schemas.v1.organization import OrganisationSpec, OrganisationV1 +from lineage.models import Edge, Node, Source +from workspaces.models import Workspace, Organisation +from typing import Optional, Any, Sequence, List +from uuid import UUID +import pprint +from django.db.models import Q + + +def get_data_source_models(data_sources: Sequence[SourceSpec], workspace: Workspace) -> List[Source]: + uuids = [source_id for source_id in data_sources if isinstance(source_id, UUID)] + uuid_sources = Source.objects.filter(workspace=workspace, id__in=uuids).all() + if missing_uuids := set(uuids) - set(model.id for model in uuid_sources): + raise ValueError( + f"Some of the provided source ids do not exist in the database. Please insure the following source ids" + f"have been created in the database: \n" + f"{pprint.pprint(list(missing_uuids))}" + ) + + source_model_gen = (node_source for node_source in data_sources if isinstance(node_source, SourceSpec)) + source_models = [source_v1_spec_to_model(node_source, workspace=workspace) for node_source in source_model_gen] + return [*uuid_sources, *source_models] + + +def organization_v1_spec_to_model(organization: OrganisationSpec) -> Organisation: + raise NotImplementedError() + + +def organization_v1_to_model(organization: OrganisationV1) -> Organisation: + return organization_v1_spec_to_model(organization.spec) + + +def workspace_v1_spec_to_model(workspace_arg: WorkspaceSpec) -> Workspace: + raise NotImplementedError() + + +def workspace_v1_to_model(workspace_arg: WorkspaceV1) -> Workspace: + return workspace_v1_spec_to_model(workspace_arg.spec) + + +def source_v1_spec_to_model(source: SourceSpec, workspace: Workspace) -> Source: + return Source(name=source.name, workspace=workspace) + + +def source_v1_to_model(source: SourceV1, workspace: Workspace) -> Source: + return source_v1_spec_to_model(source.spec, workspace) + + +def source_node_v1_spec_to_model(source_node: SourcedNodeSpec, workspace: Workspace) -> Node: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + return node_v1_spec_to_model(source_node.to_node(), workspace) + + +def source_node_v1_to_model(source_node: SourcedNodeV1, workspace: Workspace) -> Node: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + return source_node_v1_spec_to_model(source_node.spec, workspace) + + +def node_v1_spec_to_model(node: NodeSpec, workspace: Workspace) -> Node: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + values = node.dict(exclude={"data_sources", "workspace"}) | {"workspace": workspace} + + result = Node(**values) + result.set_names() + + return result + + +def node_v1_to_model(node: NodeV1, workspace: Workspace) -> Node: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + return node_v1_spec_to_model(node.spec, workspace) + + +def source_edge_v1_spec_to_model(source_edge: SourcedEdgeSpec, workspace: Workspace) -> Node: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + return edge_v1_spec_to_model(source_edge.to_edge(), workspace) + + +def source_edge_v1_to_model(source_edge: SourcedEdgeV1, workspace: Workspace) -> Node: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + return source_edge_v1_spec_to_model(source_edge.spec, workspace) + + +def edge_v1_spec_to_model(edge: EdgeSpec, workspace: Workspace) -> Edge: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + values = edge.dict(exclude={"workspace", "data_sources"}) | {"workspace": workspace} + + if edge.source.id is None or edge.destination.id is None: + source_name = Q(name=edge.source.name, namespace=edge.source.namespace) + destination_name = Q(name=edge.destination.name, namespace=edge.destination.namespace) + workspace_filter = Q(workspace=workspace) + query = (source_name | destination_name) & workspace_filter + + nodes = Node.objects.filter(query).all() + if len(nodes) != 2: + raise ValueError( + f"Could not find the source and destination nodes for edge name={edge.name}, namespace={edge.namespace}" + f" in the `{workspace}` workspace." + ) + source, destination = nodes + if source.name != edge.source.name or source.namespace != edge.source.namespace: + destination, source = source, destination + else: + source = Node(**edge.source.dict(exclude={"namespace"})) + destination = Node(**edge.destination.dict(exclude={"namespace"})) + + values["source"] = source + values["destination"] = destination + + result = Edge(**values) + result.set_names() + + return result + + +def edge_v1_to_model(edge: EdgeV1, workspace: Workspace) -> Edge: + """ + WARNING: Does not set ManyToMany relationships like data_sources for performance reasons. + """ + return edge_v1_spec_to_model(edge.spec, workspace) + + +def schema_to_model(item: Any, workspace: Optional[Workspace] = None): + if isinstance(item, NodeV1): + return node_v1_to_model(item, workspace) + elif isinstance(item, NodeSpec): + return node_v1_spec_to_model(item, workspace) + elif isinstance(item, EdgeSpec): + return edge_v1_spec_to_model(item, workspace) + elif isinstance(item, EdgeV1): + return edge_v1_to_model(item, workspace) + elif isinstance(item, SourceSpec): + return source_v1_spec_to_model(item, workspace) + elif isinstance(item, SourceV1): + return source_v1_to_model(item, workspace) + elif isinstance(item, WorkspaceV1): + return workspace_v1_to_model(item, workspace) + elif isinstance(item, WorkspaceSpec): + return workspace_v1_spec_to_model(item, workspace) + elif isinstance(item, OrganisationSpec): + return organization_v1_spec_to_model(item) + elif isinstance(item, OrganisationV1): + return organization_v1_to_model(item) + elif isinstance(item, SourcedEdgeV1): + return source_edge_v1_to_model(item, workspace) + elif isinstance(item, SourcedNodeV1): + return source_node_v1_to_model(item, workspace) + elif isinstance(item, SourcedEdgeSpec): + return source_edge_v1_spec_to_model(item, workspace) + elif isinstance(item, SourcedNodeSpec): + return source_node_v1_spec_to_model(item, workspace) + else: + raise NotImplementedError(f"Cannot convert {type(item)} to a db model") diff --git a/grai-server/app/connections/adapters/yaml_file.py b/grai-server/app/connections/adapters/yaml_file.py index 2b186ab2d..352c8ca6e 100644 --- a/grai-server/app/connections/adapters/yaml_file.py +++ b/grai-server/app/connections/adapters/yaml_file.py @@ -1,84 +1,49 @@ -from grai_schemas.v1 import EdgeV1, NodeV1 - +from grai_schemas.v1 import EdgeV1, NodeV1, SourcedEdgeV1, SourcedNodeV1, OrganisationV1, SourceV1, WorkspaceV1 +from grai_schemas.serializers import GraiYamlSerializer +from grai_schemas.schema import Schema +from lineage.models import Edge, Node from connections.models import Run, RunFile from connections.task_helpers import get_node +from typing import Sequence from .base import BaseAdapter +from .schemas import schema_to_model +from grai_schemas.v1.node import NodeV1, SourcedNodeV1 +from grai_schemas.v1.edge import EdgeV1, SourcedEdgeV1 +from itertools import tee -class YamlFileAdapter(BaseAdapter): - def validate_file(self, run: Run, runFile: RunFile): - import yaml - from grai_schemas.schema import Schema - - with runFile.file.open("r") as f: - for item in yaml.safe_load_all(f): - spec = item["spec"] +SUPPORTED_SCHEMA_TYPES = {SourcedNodeV1, SourcedEdgeV1} +SUPPORTED_SCHEMA_TYPE_NAMES = {schema.__name__ for schema in SUPPORTED_SCHEMA_TYPES} - if not spec.get("data_sources", None): - spec["data_sources"] = [ - { - "name": run.source.name, - } - ] +class YamlFileAdapter(BaseAdapter): + @staticmethod + def process_content(self, run_file: RunFile): + file_content = GraiYamlSerializer.load(run_file.file) + if isinstance(file_content, Sequence): + for item in file_content: yield Schema(entity=item).entity - - def run_update(self, run: Run): - from lineage.models import Edge, Node - - runFile = run.files.first() - - entities = self.validate_file(run, runFile) - - for entity in entities: - type = entity.type - values = entity.spec.dict(exclude_none=True) - - Model = Node if type == "Node" else Edge - - if type == "Edge": - values["source"] = get_node(run.workspace, values["source"]) - values["destination"] = get_node(run.workspace, values["destination"]) - - values.pop("data_sources") - - try: - record = Model.objects.filter(workspace=run.workspace).get( - name=entity.spec.name, namespace=entity.spec.namespace - ) - provided_values = {k: v for k, v in values.items() if v} - - for key, value in provided_values.items(): - setattr(record, key, value) - - record.save() - except Model.DoesNotExist: - values["workspace"] = run.workspace - record = Model.objects.create(**values) - - relationship = run.source.nodes if type == "Node" else run.source.edges - relationship.add(record) + else: + yield Schema(entity=file_content).entity def get_nodes_and_edges(self): - runFile = self.run.files.first() - - entities = self.validate_file(self.run, runFile) + run_file = self.run.files.first() - nodes = [] - edges = [] - - for entity in entities: - if entity.type == "Node": - nodes.append(NodeV1.from_spec(entity.spec)) - elif entity.type == "Edge": - edges.append(EdgeV1.from_spec(entity.spec)) + iter_a, iter_b = tee(self.process_content(self.run, run_file), 2) + nodes = [obj for obj in iter_a if isinstance(obj, SourcedNodeV1)] + edges = [obj for obj in iter_b if isinstance(obj, SourcedEdgeV1)] return nodes, edges def run_validate(self, run: Run) -> bool: - self.run = run - - self.get_nodes_and_edges() + result_types = {type(result) for result in self.process_content(run, run.files.first())} + if not result_types.issubset(SUPPORTED_SCHEMA_TYPES): + unsupported_types = result_types.difference(SUPPORTED_SCHEMA_TYPES) + unsupported_typenames = [schema.__name__ for schema in unsupported_types] + raise ValueError( + f"The Yaml integration currently only supports uploading `{SUPPORTED_SCHEMA_TYPE_NAMES}`. " + f"The provided file contains unsupported types: `{unsupported_typenames}`" + ) return True diff --git a/grai-server/app/connections/migrations/0022_alter_connector_slug.py b/grai-server/app/connections/migrations/0022_alter_connector_slug.py index 611927964..b68594fc8 100644 --- a/grai-server/app/connections/migrations/0022_alter_connector_slug.py +++ b/grai-server/app/connections/migrations/0022_alter_connector_slug.py @@ -4,7 +4,6 @@ class Migration(migrations.Migration): - dependencies = [ ("connections", "0021_alter_run_connection"), ] diff --git a/grai-server/app/connections/migrations/0025_alter_connector_slug.py b/grai-server/app/connections/migrations/0025_alter_connector_slug.py index 756418e90..0b6f9dbc7 100644 --- a/grai-server/app/connections/migrations/0025_alter_connector_slug.py +++ b/grai-server/app/connections/migrations/0025_alter_connector_slug.py @@ -4,7 +4,6 @@ class Migration(migrations.Migration): - dependencies = [ ("connections", "0024_alter_connection_source_alter_run_source"), ] diff --git a/grai-server/app/connections/task_helpers.py b/grai-server/app/connections/task_helpers.py index 84d475b16..03225f1fa 100644 --- a/grai-server/app/connections/task_helpers.py +++ b/grai-server/app/connections/task_helpers.py @@ -1,14 +1,15 @@ import uuid +import warnings from copy import deepcopy from itertools import chain -from typing import Any, Dict, List, Optional, Sequence, Tuple, TypeVar, Union +from typing import Any, Dict, List, Optional, Sequence, Tuple, TypeVar, Union, Protocol, TypedDict from django.db import models from django.db.models import Q from grai_schemas.schema import GraiType from grai_schemas.utilities import merge from grai_schemas.v1 import EdgeV1, NodeV1, SourcedEdgeV1, SourcedNodeV1 -from grai_schemas.v1.node import NodeNamedID +from grai_schemas.v1.node import NodeNamedID, NamedSpec as NodeNamedSpec from grai_schemas.v1.source import SourceSpec from multimethod import multimethod from pydantic import BaseModel @@ -17,8 +18,33 @@ from lineage.models import Node as NodeModel from lineage.models import Source from workspaces.models import Workspace +from django.contrib.postgres.aggregates import ArrayAgg +from django.db.models.functions import Coalesce +from functools import singledispatch +from django.db.models import Value +from .adapters.schemas import schema_to_model +from uuid import UUID -T = TypeVar("T") + +class NameNamespace(Protocol): + name: str + namespace: str + id: Optional[UUID] + + +class NameNamespaceDict(TypedDict): + name: str + namespace: str + id: Optional[UUID] + + +class SpecNameNamespace(Protocol): + spec: NameNamespace + + +T = TypeVar("T", bound=SpecNameNamespace) +P = TypeVar("P", bound=SpecNameNamespace) +LineageModel = Union[NodeModel, EdgeModel] def to_dict(instance): @@ -52,8 +78,8 @@ def merge_node_node(a: models.Model, b: models.Model) -> models.Model: return type(a)(merge(to_dict(a), to_dict(b))) -def get_node(workspace: Workspace, grai_type: dict) -> NodeModel: - if grai_type.get("id") is not None: +def get_node(workspace: Workspace, grai_type: NameNamespaceDict) -> NodeModel: + if grai_type.get("id", None) is not None: return NodeModel(**grai_type) return NodeModel.objects.filter(workspace=workspace).get( @@ -61,21 +87,34 @@ def get_node(workspace: Workspace, grai_type: dict) -> NodeModel: ) -def deactivate(items: List) -> List: - for item in items: - item.is_active = False +def build_item_query_filter(from_items: List[SpecNameNamespace], workspace: Workspace): + query = Q(workspace=workspace) + for item in from_items: + query |= Q(name=item.spec.name) & Q(namespace=item.spec.namespace) - return items + return query -def get_existing_items(from_items, workspace, Model): - query = Q() - for item in from_items: - query |= Q(name=item["name"]) & Q(namespace=item["namespace"]) - item["workspace"] = workspace +def get_existing_nodes(from_items: List[Union[SourcedNodeV1, NodeV1]], workspace: Workspace) -> List[NodeV1]: + query = build_item_query_filter(from_items, workspace) - query &= Q(workspace=workspace) - return Model.objects.filter(query).all() + # The data_sources don't matter for this code path, so we don't have to fetch them from the db + default_dict = {"data_sources": [], "workspace": workspace.id} + return [NodeV1.from_spec({**model.__dict__, **default_dict}) for model in NodeModel.objects.filter(query).all()] + + +def get_existing_edges(from_items: List[Union[SourcedEdgeV1, EdgeV1]], workspace: Workspace) -> List[EdgeV1]: + query = build_item_query_filter(from_items, workspace) + + default_dict = {"data_sources": []} + result = [] + for item in EdgeModel.objects.filter(query).all(): + edge_dict = {**item.__dict__, **default_dict} + edge_dict["workspace"] = edge_dict.pop("workspace_id") + edge_dict["source"] = {"id": edge_dict.pop("source_id")} + edge_dict["destination"] = {"id": edge_dict.pop("destination_id")} + result.append(EdgeV1.from_spec(edge_dict)) + return result def get_edge_nodes_from_database(items, workspace): @@ -90,165 +129,121 @@ def get_edge_nodes_from_database(items, workspace): return nodes -# def process_updates(workspace, Model, items): -# obj_type = items[0].type -# items = [item.spec.dict() for item in items] -# for item in items: -# item.pop('id', None) -# item['workspace'] = workspace -# -# existing_items = get_existing_items(items, workspace, Model) -# -# current_item_map = {(item.name, item.namespace): item for item in existing_items} -# item_map = {(item["name"], item["namespace"]): item for item in items} -# -# new_item_keys = item_map.keys() - current_item_map.keys() -# deactivated_item_keys = current_item_map.keys() - item_map.keys() -# updated_item_keys = item_map.keys() - new_item_keys -# -# for k, model in current_item_map.items(): -# item_map[k]["id"] = model.id -# -# if obj_type == "Edge": -# -# for k, model in current_item_map.items(): -# item_map[k]["source"] = model.source -# item_map[k]["destination"] = model.destination -# -# node_map = get_edge_nodes_from_database([item_map[key] for key in new_item_keys], workspace) -# -# for key in new_item_keys: -# source = item_map[key]["source"] -# destination = item_map[key]["destination"] -# item_map[key]["source"] = node_map[(source["name"], source["namespace"])] -# item_map[key]["destination"] = node_map[(destination["name"], destination["namespace"])] -# -# deactivated_items = deactivate([current_item_map[k] for k in deactivated_item_keys]) -# -# new_items = [Model(**item_map[k]) for k in new_item_keys] -# for item in new_items: -# item.set_names() -# -# -# updated_items = (merge(current_item_map[k], item_map[k]) for k in updated_item_keys) -# updated_items = list(updated_items) -# -# return new_items, deactivated_items, updated_items - - -# def update( -# workspace: Workspace, -# items: List[GraiType], -# ): -# if not items: -# return -# obj_type = items[0].type -# Model = NodeModel if obj_type == "Node" else EdgeModel -# -# new_items, deactivated_items, updated_items = process_updates(workspace, Model, items) -# -# #Model.objects.bulk_update(deactivated_items, ["is_active"]) -# #Model.objects.bulk_update(updated_items, ["metadata"]) -# for item in updated_items: -# item.save() -# Model.objects.bulk_create(new_items) - - -def process_updates(workspace, source: Source, Model: T, items, active_items=None) -> Tuple[List[T], List[T], List[T]]: - if not items: - return [], [], [] +def compute_graph_changes(items: List[T], active_items: List[P]) -> Tuple[List[T], List[P], List[P]]: + current_item_map: Dict[Tuple[str, str], P] = {(item.spec.name, item.spec.namespace): item for item in active_items} + item_map: Dict[Tuple[str, str], T] = {(item.spec.name, item.spec.namespace): item for item in items} + + new_item_keys = item_map.keys() - current_item_map.keys() + deactivated_item_keys = current_item_map.keys() - item_map.keys() + updated_item_keys = item_map.keys() - new_item_keys - type = items[0].type - if type == "Node": - Schema = NodeV1 - sourced = False - elif type == "Edge": - Schema = EdgeV1 - sourced = False - elif type == "SourceNode": - Schema = SourcedNodeV1 - sourced = True - elif type == "SourceEdge": - Schema = SourcedEdgeV1 - sourced = True + new_items = [item_map[k] for k in new_item_keys] + deactivated_items = [current_item_map[k] for k in deactivated_item_keys] + updated_items: List[P] = [ + merge(current_item_map[k], item_map[k]) for k in updated_item_keys if item_map[k] != current_item_map[k] + ] + return new_items, deactivated_items, updated_items - active_models = get_existing_items([item.spec.dict() for item in items], workspace, Model) - if active_items is None: - active_items = [] +def process_source_nodes( + workspace: Workspace, items: List[SourcedNodeV1], existing_nodes: Optional[List[NodeV1]] = None +) -> Tuple[List[NodeModel], List[NodeModel], List[NodeModel]]: + if isinstance(existing_nodes, list): + if not all(isinstance(node, NodeV1) for node in existing_nodes): + raise ValueError( + f"existing_edges must be a list of NodeV1, got list of " + f"Union[{set(type(node) for node in existing_nodes)}]" + ) + if not all(edge.spec.id for edge in existing_nodes): + raise ValueError("Some edges in existing_edges are missing ids") - for active_model in active_models: - spec = active_model.__dict__ + active_nodes = existing_nodes + elif existing_nodes is None: + active_nodes = get_existing_nodes(items, workspace) + else: + raise ValueError("existing_edges must be a list of EdgeV1 or None") - if sourced: - spec["data_source"] = SourceSpec(id=source.id, name=source.name) - else: - spec["data_sources"] = [SourceSpec(id=source.id, name=source.name)] + new_items, deactivated_items, updated_items = compute_graph_changes(items, active_nodes) - if type in ["Edge", "SourceEdge"]: - spec["source"] = NodeNamedID(**active_model.source.__dict__) - spec["destination"] = NodeNamedID(**active_model.destination.__dict__) + new = [schema_to_model(item, workspace) for item in new_items] + deactivated = [schema_to_model(item, workspace) for item in deactivated_items] + updated = [schema_to_model(item, workspace) for item in updated_items] - active_items.append(Schema.from_spec(spec)) + return new, deactivated, updated - current_item_map = {(item.spec.name, item.spec.namespace): item for item in active_items} - item_map: Dict[int, T] = {(item.spec.name, item.spec.namespace): item for item in items} - new_item_keys = item_map.keys() - current_item_map.keys() - deactivated_item_keys = current_item_map.keys() - item_map.keys() - updated_item_keys = item_map.keys() - new_item_keys +def process_source_edges( + workspace: Workspace, items: List[SourcedEdgeV1], existing_edges: Optional[List[EdgeV1]] = None +) -> Tuple[List[EdgeModel], List[EdgeModel], List[EdgeModel]]: + def build_model_from_schema(item: Union[EdgeV1, SourcedEdgeV1]) -> EdgeModel: + values = item.spec.dict() | {"workspace": workspace} + values["source"] = get_node(workspace, values["source"]) + values["destination"] = get_node(workspace, values["destination"]) - deactivated_items = [current_item_map[k] for k in deactivated_item_keys] - for item in deactivated_items: - item.spec.is_active = False + for key in ["data_source", "data_sources"]: + values.pop(key, None) - new_items = [item_map[k] for k in new_item_keys] + return EdgeModel(**values) - updated_items = [ - merge(item_map[k], current_item_map[k]) for k in updated_item_keys if item_map[k] != current_item_map[k] - ] + if isinstance(existing_edges, list): + if not all(isinstance(node, EdgeV1) for node in existing_edges): + raise ValueError( + f"existing_edges must be a list of EdgeV1, got list of " + f"Union[{set(type(node) for node in existing_edges)}]" + ) + if not all(edge.spec.id for edge in existing_edges): + raise ValueError("Some edges in existing_edges are missing ids") - def schemaToModel(item): - values = item.spec.dict() - # breakpoint() - values["workspace"] = workspace - # values["display_name"] = values["name"] + active_edges = existing_edges + elif existing_edges is None: + active_edges = get_existing_edges(items, workspace) + else: + raise ValueError("existing_edges must be a list of EdgeV1 or None") - if type in ["Edge", "SourceEdge"]: - values["source"] = get_node(workspace, values["source"]) - values["destination"] = get_node(workspace, values["destination"]) + new_items, deactivated_items, updated_items = compute_graph_changes(items, active_edges) + new = [schema_to_model(item, workspace) for item in new_items] + deactivated = [schema_to_model(item, workspace) for item in deactivated_items] + updated = [schema_to_model(item, workspace) for item in updated_items] - if "data_source" in values: - values.pop("data_source") - if "data_sources" in values: - values.pop("data_sources") + return new, deactivated, updated - result = Model(**values) - result.set_names() - return result - new = [schemaToModel(item) for item in new_items] - updates = [schemaToModel(item) for item in updated_items] - deactivated_items = [schemaToModel(item) for item in deactivated_items] - # breakpoint() - return new, deactivated_items, updates +def process_updates( + workspace: Workspace, + items: Optional[Union[list[SourcedNodeV1], list[SourcedEdgeV1]]] = None, + existing_items: Optional[Union[list[NodeV1], list[EdgeV1]]] = None, +) -> Tuple[List[LineageModel], List[LineageModel], List[LineageModel]]: + if not items: + return [], [], [] + + item_types = {type(item) for item in items} + if len(item_types) != 1: + raise ValueError(f"Can't process updates for multiple item types {item_types}") + + if isinstance(items[0], SourcedNodeV1): + new, old, updated = process_source_nodes(workspace, items, existing_items) + elif isinstance(items[0], SourcedEdgeV1): + new, old, updated = process_source_edges(workspace, items, existing_items) + else: + raise ValueError(f"Cannot process updates for items of type {type(items[0])}") + + return new, old, updated def update( workspace: Workspace, source: Source, items: List[T], - active_items: Optional[List[T]] = None, + active_items: Optional[Union[list[NodeV1], list[EdgeV1]]] = None, ): if not items: return - type = items[0].type - - Model = NodeModel if type in ["Node", "SourceNode"] else EdgeModel - relationship = source.nodes if type in ["Node", "SourceNode"] else source.edges + item_types = items[0].type + Model = NodeModel if item_types in ["Node", "SourceNode"] else EdgeModel + relationship = source.nodes if item_types in ["Node", "SourceNode"] else source.edges - new_items, deactivated_items, updated_items = process_updates(workspace, source, Model, items, active_items) + new_items, deactivated_items, updated_items = process_updates(workspace, items, active_items) Model.objects.bulk_create(new_items) Model.objects.bulk_update(updated_items, ["metadata"]) diff --git a/grai-server/app/connections/tests/test_task_helpers.py b/grai-server/app/connections/tests/test_task_helpers.py index 284d402b9..c8ad0ed9e 100644 --- a/grai-server/app/connections/tests/test_task_helpers.py +++ b/grai-server/app/connections/tests/test_task_helpers.py @@ -1,13 +1,16 @@ import uuid import pytest -from grai_schemas.v1 import EdgeV1, NodeV1 +from grai_schemas.v1 import EdgeV1, NodeV1, mock, SourcedNodeV1, SourcedEdgeV1 from connections.task_helpers import get_node, process_updates, update from lineage.models import Edge, Node, Source from workspaces.models import Organisation, Workspace +mocker = mock.MockV1() + + @pytest.fixture def test_organisation(): return Organisation.objects.create(name=str(uuid.uuid4())) @@ -45,20 +48,20 @@ def test_edge(test_workspace, test_source_node, test_destination_node): @pytest.fixture def test_node_v1(): - return NodeV1.from_spec( + return SourcedNodeV1.from_spec( { "name": "node1", "namespace": "default", "display_name": "node1", "metadata": {"grai": {"node_type": "Generic"}}, - "data_sources": [], + "data_source": {"name": "temp"}, } ) @pytest.fixture def test_edge_v1(test_workspace, test_source_node, test_destination_node): - return EdgeV1.from_spec( + return SourcedEdgeV1.from_spec( { "name": "edge1", "namespace": "default", @@ -73,6 +76,7 @@ def test_edge_v1(test_workspace, test_source_node, test_destination_node): "namespace": "default", "id": str(test_destination_node.id), }, + "data_source": {"name": "temp"}, "metadata": {"grai": {"edge_type": "Generic"}}, } ) @@ -118,25 +122,27 @@ def test_no_node(self, test_workspace): assert str(e_info.value) == "Node matching query does not exist." -def mock_node(test_workspace): +def mock_node(test_workspace, namespace="default"): return Node( workspace=test_workspace, name=str(uuid.uuid4()), + namespace=namespace, metadata={"grai": {"node_type": "Generic"}}, ) -def mock_node_schema(node, metadata={}): +def mock_node_schema(node, test_source, metadata={}): spec = { + "id": node.id, "name": node.name, "namespace": node.namespace, "display_name": node.display_name, "workspace": node.workspace.id, "metadata": node.metadata, - "data_sources": [], + "data_source": {"name": test_source.name}, } spec["metadata"].update(metadata) - return NodeV1.from_spec(spec) + return SourcedNodeV1.from_spec(spec) def mock_edge(source, destination, test_workspace): @@ -149,9 +155,10 @@ def mock_edge(source, destination, test_workspace): ) -def mock_edge_schema(edge): - return EdgeV1.from_spec( +def mock_edge_schema(edge, test_source): + return SourcedEdgeV1.from_spec( { + "id": edge.id, "name": edge.name, "namespace": edge.namespace, "display_name": edge.display_name, @@ -166,7 +173,7 @@ def mock_edge_schema(edge): "id": str(edge.destination.id), }, "metadata": edge.metadata, - "data_sources": [], + "data_source": {"name": test_source.name}, } ) @@ -184,7 +191,7 @@ def test_create_edges(self, test_workspace, test_source): for node in nodes: node.save() edge = mock_edge(*nodes, test_workspace) - items = [mock_edge_schema(edge)] + items = [mock_edge_schema(edge, test_source)] update(test_workspace, test_source, items) @@ -194,7 +201,7 @@ def test_update_edges(self, test_workspace, test_source): for node in nodes: node.save() edge = mock_edge(*nodes, test_workspace) - updated_edge = mock_edge_schema(edge) + updated_edge = mock_edge_schema(edge, test_source) updated_edge.spec.name = "a_new_place" items = [updated_edge] @@ -204,14 +211,14 @@ def test_update_edges(self, test_workspace, test_source): @pytest.mark.django_db def test_empty(self, test_workspace, test_source): - new, old, updated = process_updates(test_workspace, test_source, Node, None) + new, old, updated = process_updates(test_workspace) @pytest.mark.django_db def test_correct_new_items(self, test_workspace, test_source): nodes = [mock_node(test_workspace) for _ in range(2)] nodes[0].save() - mock_nodes = [mock_node_schema(node) for node in nodes] - new, old, updated = process_updates(test_workspace, test_source, Node, mock_nodes) + mock_nodes = [mock_node_schema(node, test_source) for node in nodes] + new, old, updated = process_updates(test_workspace, mock_nodes) assert len(new) == 1 assert new[0].name == nodes[1].name @@ -219,18 +226,19 @@ def test_correct_new_items(self, test_workspace, test_source): def test_correct_updated_items(self, test_workspace, test_source): nodes = [mock_node(test_workspace) for _ in range(2)] nodes[0].save() - mock_nodes = [mock_node_schema(node) for node in nodes] - new, old, updated = process_updates(test_workspace, test_source, Node, mock_nodes) + mock_nodes = [mock_node_schema(node, test_source) for node in nodes] + new, old, updated = process_updates(test_workspace, mock_nodes) assert len(updated) == 1 assert updated[0].name == nodes[0].name @pytest.mark.django_db def test_correct_updated_metadata(self, test_workspace, test_source): + mocker.node.named_node_spec(workspace=test_workspace.id, source=test_source.id) nodes = [mock_node(test_workspace) for _ in range(2)] nodes[0].metadata["test"] = {"key": "this is a test"} nodes[0].save() - mock_nodes = [mock_node_schema(node, {"test2": 2}) for node in nodes] - new, old, updated = process_updates(test_workspace, test_source, Node, mock_nodes) + mock_nodes = [mock_node_schema(node, test_source, {"test2": 2}) for node in nodes] + new, old, updated = process_updates(test_workspace, mock_nodes) updated = updated[0].metadata assert "test" in updated assert isinstance(updated["test"], dict) @@ -239,13 +247,239 @@ def test_correct_updated_metadata(self, test_workspace, test_source): assert isinstance(updated["grai"], dict) assert updated["grai"]["node_type"] == "Generic" - assert "test2" in updated - assert updated["test2"] == 2 + assert "test2" in updated["sources"][test_source.name] + assert updated["sources"][test_source.name]["test2"] == 2 + + @pytest.mark.django_db + def test_process_updates_sourced_node_existing(self, test_workspace, test_source): + nodes = [mock_node(test_workspace) for _ in range(4)] + + for node in nodes: + node.save() + + workspace = mocker.workspace.workspace_spec(id=test_workspace.id, name=test_workspace.name) + source = mocker.source.source_spec(name=test_source.name, id=test_source.id, workspace=workspace.id) + kwargs = {"data_source": source, "workspace": workspace.id, "namespace": nodes[0].namespace} + + existing_node_spec = [ + mocker.node.named_source_node_spec(name=node.name, id=node.id, **kwargs) for node in nodes + ] + new_node_spec = [mocker.node.named_source_node_spec(**kwargs) for node in range(2)] + + created_nodes = [mocker.node.sourced_node(spec=spec) for spec in existing_node_spec] + updated_nodes = created_nodes[0:2] + deleted_nodes = created_nodes[2:4] + new_nodes = [mocker.node.sourced_node(spec=spec) for spec in new_node_spec] + + existing_nodes = [] + for node in created_nodes: + item = node.spec.dict(exclude_none=True, exclude={"data_source", "workspace"}) + item["data_sources"] = [] + existing_nodes.append(NodeV1.from_spec(item)) + + new, deleted, updated = process_updates(test_workspace, [*new_nodes, *updated_nodes], existing_nodes) + + assert len(new) == len(new_nodes) + new_ids = {(item.name, item.namespace) for item in new} + new_node_ids = {(item.spec.name, item.spec.namespace) for item in new_nodes} + assert new_ids == new_node_ids + + assert len(deleted) == len(deleted_nodes) + deleted_ids = {(item.name, item.namespace) for item in deleted} + deleted_node_ids = {(item.spec.name, item.spec.namespace) for item in deleted_nodes} + assert deleted_ids == deleted_node_ids + + assert len(updated) == len(updated_nodes) + assert all(updated_node.metadata.keys() == {"grai", "sources"} for updated_node in updated) + assert all(len(updated_node.metadata["sources"]) == 1 for updated_node in updated) + assert all(test_source.name in updated_node.metadata["sources"] for updated_node in updated) + + @pytest.mark.django_db + def test_process_updates_sourced_node_default_existing(self, test_workspace, test_source): + nodes = [mock_node(test_workspace) for _ in range(4)] + + for node in nodes: + node.save() + workspace = mocker.workspace.workspace_spec(id=test_workspace.id, name=test_workspace.name) + source = mocker.source.source_spec(name=test_source.name, id=test_source.id, workspace=workspace.id) + + kwargs = {"data_source": source, "workspace": workspace.id, "namespace": nodes[0].namespace} + + existing_node_spec = [mocker.node.named_source_node_spec(name=node.name, **kwargs) for node in nodes] + new_node_spec = [mocker.node.named_source_node_spec(**kwargs) for node in range(2)] + + created_nodes = [mocker.node.sourced_node(spec=spec) for spec in existing_node_spec] + + updated_nodes = created_nodes[0:2] + deleted_nodes = created_nodes[2:4] + new_nodes = [mocker.node.sourced_node(spec=spec) for spec in new_node_spec] + + new, deleted, updated = process_updates(test_workspace, [*new_nodes, *updated_nodes]) + + assert len(new) == len(new_nodes) + new_ids = {(item.name, item.namespace) for item in new} + new_node_ids = {(item.spec.name, item.spec.namespace) for item in new_nodes} + assert new_ids == new_node_ids + + assert len(deleted) == len(deleted_nodes) + deleted_ids = {(item.name, item.namespace) for item in deleted} + deleted_node_ids = {(item.spec.name, item.spec.namespace) for item in deleted_nodes} + assert deleted_ids == deleted_node_ids + + assert len(updated) == len(updated_nodes) + assert all(updated_node.metadata.keys() == {"grai", "sources"} for updated_node in updated) + assert all(len(updated_node.metadata["sources"]) == 1 for updated_node in updated) + assert all(test_source.name in updated_node.metadata["sources"] for updated_node in updated) + + @pytest.mark.django_db + def test_process_updates_sourced_edge_existing(self, test_workspace, test_source): + edges = [mock_edge(*[mock_node(test_workspace) for _ in range(2)], test_workspace) for _ in range(4)] + for edge in edges: + edge.source.save() + edge.destination.save() + edge.save() + + source = mocker.source.source_spec(name=test_source.name, id=test_source.id, workspace=test_workspace.id) + workspace = mocker.workspace.workspace_spec(id=test_workspace.id, name=test_workspace.name) + kwargs = {"data_source": source, "workspace": workspace.id, "namespace": edges[0].namespace} + + existing_edge_spec = [] + for edge in edges: + source = {"name": edge.source.name, "namespace": edge.source.namespace, "id": str(edge.source.id)} + destination = { + "name": edge.destination.name, + "namespace": edge.destination.namespace, + "id": str(edge.destination.id), + } + mock_spec = mocker.edge.named_source_edge_spec( + name=edge.name, source=source, destination=destination, id=edge.id, **kwargs + ) + existing_edge_spec.append(mock_spec) + + edge_nodes = [mock_node(test_workspace) for _ in range(3)] + + for node in edge_nodes: + node.save() + new_edge_spec = [] + for i, edge in enumerate(range(2)): + source = { + "name": edge_nodes[0 + i].name, + "namespace": edge_nodes[0 + i].namespace, + "id": str(edge_nodes[0 + i].id), + } + destination = { + "name": edge_nodes[1 + i].name, + "namespace": edge_nodes[1 + i].namespace, + "id": str(edge_nodes[1 + i].id), + } + mock_spec = mocker.edge.named_source_edge_spec(**kwargs, source=source, destination=destination) + new_edge_spec.append(mock_spec) + + created_edges = [mocker.edge.sourced_edge(spec=spec) for spec in existing_edge_spec] + updated_edges = created_edges[0:2] + deleted_edges = created_edges[2:4] + new_edges = [mocker.edge.sourced_edge(spec=spec) for spec in new_edge_spec] + + existing_edges = [] + for edge in created_edges: + item = edge.spec.dict(exclude_none=True, exclude={"data_source", "workspace"}) + item["data_sources"] = [] + existing_edges.append(EdgeV1.from_spec(item)) + + new, deleted, updated = process_updates(test_workspace, [*new_edges, *updated_edges], existing_edges) + + assert len(new) == len(new_edges) + new_ids = {(item.name, item.namespace) for item in new} + new_edge_ids = {(item.spec.name, item.spec.namespace) for item in new_edges} + assert new_ids == new_edge_ids + + assert len(deleted) == len(deleted_edges) + deleted_ids = {(item.name, item.namespace) for item in deleted} + deleted_edge_ids = {(item.spec.name, item.spec.namespace) for item in deleted_edges} + assert deleted_ids == deleted_edge_ids + + assert len(updated) == len(updated_edges) + assert all(updated_edge.metadata.keys() == {"grai", "sources"} for updated_edge in updated) + assert all(len(updated_edge.metadata["sources"]) == 1 for updated_edge in updated) + assert all(test_source.name in updated_edge.metadata["sources"] for updated_edge in updated) + + @pytest.mark.django_db + def test_process_updates_sourced_edge_default_existing(self, test_workspace, test_source): + edges = [mock_edge(*[mock_node(test_workspace) for _ in range(2)], test_workspace) for _ in range(4)] + for edge in edges: + edge.source.save() + edge.destination.save() + edge.save() + + workspace = mocker.workspace.workspace_spec(id=test_workspace.id, name=test_workspace.name) + source = mocker.source.source_spec(name=test_source.name, id=test_source.id, workspace=workspace.id) + + kwargs = {"data_source": source, "workspace": workspace.id, "namespace": edges[0].namespace} + + existing_edge_spec = [] + for edge in edges: + source = {"name": edge.source.name, "namespace": edge.source.namespace, "id": str(edge.source.id)} + destination = { + "name": edge.destination.name, + "namespace": edge.destination.namespace, + "id": str(edge.destination.id), + } + mock_spec = mocker.edge.named_source_edge_spec( + name=edge.name, source=source, destination=destination, **kwargs + ) + existing_edge_spec.append(mock_spec) + + edge_nodes = [mock_node(test_workspace) for _ in range(3)] + for node in edge_nodes: + node.save() + + new_edge_spec = [] + for i, edge in enumerate(range(2)): + source = { + "name": edge_nodes[0 + i].name, + "namespace": edge_nodes[0 + i].namespace, + "id": str(edge_nodes[0 + i].id), + } + destination = { + "name": edge_nodes[1 + i].name, + "namespace": edge_nodes[1 + i].namespace, + "id": str(edge_nodes[1 + i].id), + } + mock_spec = mocker.edge.named_source_edge_spec(**kwargs, source=source, destination=destination) + new_edge_spec.append(mock_spec) + + created_edges = [mocker.edge.sourced_edge(spec=spec) for spec in existing_edge_spec] + updated_edges = created_edges[0:2] + deleted_edges = created_edges[2:4] + new_edges = [mocker.edge.sourced_edge(spec=spec) for spec in new_edge_spec] + + new, deleted, updated = process_updates(test_workspace, [*new_edges, *updated_edges]) + + assert len(new) == len(new_edges) + new_ids = {(item.name, item.namespace) for item in new} + new_edge_ids = {(item.spec.name, item.spec.namespace) for item in new_edges} + assert new_ids == new_edge_ids + + assert len(deleted) == len(deleted_edges) + deleted_ids = {(item.name, item.namespace) for item in deleted} + deleted_edge_ids = {(item.spec.name, item.spec.namespace) for item in deleted_edges} + assert deleted_ids == deleted_edge_ids + + assert len(updated) == len(updated_edges) + assert all(updated_edge.metadata.keys() == {"grai", "sources"} for updated_edge in updated) + assert all(len(updated_edge.metadata["sources"]) == 1 for updated_edge in updated) + assert all(test_source.name in updated_edge.metadata["sources"] for updated_edge in updated) @pytest.mark.django_db def test_deactivated(self, test_workspace, test_source): nodes = [mock_node(test_workspace) for _ in range(2)] - nodes[0].save() - mock_nodes = [mock_node_schema(node) for node in nodes] - - update(test_workspace, test_source, mock_nodes[:1], mock_nodes) + for node in nodes: + node.save() + mock_nodes = [mock_node_schema(node, test_source) for node in nodes] + existing_nodes = [] + for node in mock_nodes: + item = node.spec.dict(exclude_none=True, exclude={"data_source", "workspace"}) + item["data_sources"] = [] + existing_nodes.append(NodeV1.from_spec(item)) + + update(test_workspace, test_source, mock_nodes[:1], existing_nodes) diff --git a/grai-server/app/connections/tests/test_tasks.py b/grai-server/app/connections/tests/test_tasks.py index 7308afab3..4e9e20099 100644 --- a/grai-server/app/connections/tests/test_tasks.py +++ b/grai-server/app/connections/tests/test_tasks.py @@ -14,6 +14,7 @@ from installations.tests.test_github import mocked_requests_post from lineage.models import Edge, Node, Source from workspaces.models import Organisation, Workspace +from django.conf import settings __location__ = os.path.realpath(os.path.join(os.getcwd(), os.path.dirname(__file__))) @@ -484,6 +485,7 @@ def test_dbt(self, test_workspace, test_dbt_connector, test_source): process_run(str(run.id)) + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_dbt_github( self, test_workspace, @@ -515,6 +517,7 @@ def test_dbt_github( process_run(str(run.id)) + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_no_connector_github(self, test_workspace, test_connector, test_commit, mocker, test_source): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) mocker.patch("installations.github.GhApi") @@ -539,6 +542,7 @@ def test_no_connector_github(self, test_workspace, test_connector, test_commit, assert str(e_info.value) == "No connector found for: Connector" + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_dbt_github_test_failure( self, test_workspace, @@ -630,6 +634,7 @@ def test_dbt_github_test_failure( process_run(str(run.id)) + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_yaml_github_test_failure( self, test_workspace, diff --git a/grai-server/app/installations/tests/test_github.py b/grai-server/app/installations/tests/test_github.py index 66e48ea99..461b9ccdf 100644 --- a/grai-server/app/installations/tests/test_github.py +++ b/grai-server/app/installations/tests/test_github.py @@ -6,6 +6,7 @@ from installations.github import Github from installations.models import Repository from workspaces.models import Organisation, Workspace +from django.conf import settings @pytest.fixture @@ -60,6 +61,7 @@ def json(self): @pytest.mark.django_db class TestInit: + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_init_with_installation_id(self, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) set_current_tenant(None) @@ -68,6 +70,7 @@ def test_init_with_installation_id(self, mocker): assert github.repo == "repo" assert github.installation_id == "1234" + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_init(self, create_repository, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) github = Github(owner="owner", repo="repo") @@ -84,6 +87,7 @@ def test_init_no_repository(self, mocker): @pytest.mark.django_db class TestCreateCheck: + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_create_check(self, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) mocker.patch("installations.github.GhApi") @@ -94,6 +98,7 @@ def test_create_check(self, mocker): assert check is not None + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_create_check_all(self, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) mocker.patch("installations.github.GhApi") @@ -106,6 +111,7 @@ def test_create_check_all(self, mocker): assert check is not None + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_create_check_no_token(self, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post_no_token) @@ -118,6 +124,7 @@ def test_create_check_no_token(self, mocker): @pytest.mark.django_db class TestStartCheck: + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_start_check(self, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) mocker.patch("installations.github.GhApi") @@ -130,6 +137,7 @@ def test_start_check(self, mocker): @pytest.mark.django_db class TestCompleteCheck: + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_complete_check(self, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) mocker.patch("installations.github.GhApi") @@ -142,6 +150,7 @@ def test_complete_check(self, mocker): @pytest.mark.django_db class TestGetRepos: + @pytest.mark.skipif(settings.GITHUB_PRIVATE_KEY is None, reason="requires github credentials") def test_start_check(self, mocker): mocker.patch("installations.github.requests.post", side_effect=mocked_requests_post) mocker.patch("installations.github.GhApi") diff --git a/grai-server/app/lineage/migrations/0012_alter_edge_display_name_alter_edge_name_and_more.py b/grai-server/app/lineage/migrations/0012_alter_edge_display_name_alter_edge_name_and_more.py index 20d8eb563..784403dd8 100644 --- a/grai-server/app/lineage/migrations/0012_alter_edge_display_name_alter_edge_name_and_more.py +++ b/grai-server/app/lineage/migrations/0012_alter_edge_display_name_alter_edge_name_and_more.py @@ -4,7 +4,6 @@ class Migration(migrations.Migration): - dependencies = [ ("lineage", "0011_remove_edge_data_source_remove_node_data_source"), ] diff --git a/grai-server/app/lineage/migrations/0016_alter_edge_metadata_alter_node_metadata.py b/grai-server/app/lineage/migrations/0016_alter_edge_metadata_alter_node_metadata.py new file mode 100644 index 000000000..af3bccdaa --- /dev/null +++ b/grai-server/app/lineage/migrations/0016_alter_edge_metadata_alter_node_metadata.py @@ -0,0 +1,27 @@ +# Generated by Django 4.2.4 on 2023-08-31 18:17 + +from django.db import migrations, models +import grai_schemas.serializers + + +class Migration(migrations.Migration): + dependencies = [ + ("lineage", "0015_source_intermediate_tables"), + ] + + operations = [ + migrations.AlterField( + model_name="edge", + name="metadata", + field=models.JSONField( + default=dict, encoder=grai_schemas.serializers.GraiEncoder + ), + ), + migrations.AlterField( + model_name="node", + name="metadata", + field=models.JSONField( + default=dict, encoder=grai_schemas.serializers.GraiEncoder + ), + ), + ] diff --git a/grai-server/app/lineage/models.py b/grai-server/app/lineage/models.py index 53f11c2b4..2b9012354 100755 --- a/grai-server/app/lineage/models.py +++ b/grai-server/app/lineage/models.py @@ -9,14 +9,17 @@ from .managers import CacheManager, SourceManager from django.core.serializers.json import DjangoJSONEncoder import json -from enum import Enum -class GraiEncoder(DjangoJSONEncoder): - def default(self, obj): - if isinstance(obj, Enum): - return obj.value - return super().default(obj) +from typing import Any + + +from enum import Enum +from uuid import UUID +from datetime import datetime, date, timezone +import pathlib +from pydantic import BaseModel +from grai_schemas.serializers import GraiEncoder # Create your models here. diff --git a/grai-server/app/poetry.lock b/grai-server/app/poetry.lock index 6644c0cbe..f83043ce2 100644 --- a/grai-server/app/poetry.lock +++ b/grai-server/app/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. [[package]] name = "algoliasearch" @@ -45,13 +45,13 @@ vine = ">=5.0.0" [[package]] name = "anyio" -version = "3.7.1" +version = "4.0.0" description = "High level compatibility layer for multiple asynchronous event loop implementations" optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "anyio-3.7.1-py3-none-any.whl", hash = "sha256:91dee416e570e92c64041bd18b900d1d6fa78dff7048769ce5ac5ddad004fbb5"}, - {file = "anyio-3.7.1.tar.gz", hash = "sha256:44a3c9aba0f5defa43261a8b3efb97891f2bd7d804e0e1f56419befa1adfc780"}, + {file = "anyio-4.0.0-py3-none-any.whl", hash = "sha256:cfdb2b588b9fc25ede96d8db56ed50848b0b649dca3dd1df0b11f683bb9e0b5f"}, + {file = "anyio-4.0.0.tar.gz", hash = "sha256:f7ed51751b2c2add651e5747c891b47e26d2a21be5d32d9311dfe9692f3e5d7a"}, ] [package.dependencies] @@ -59,9 +59,9 @@ idna = ">=2.8" sniffio = ">=1.1" [package.extras] -doc = ["Sphinx", "packaging", "sphinx-autodoc-typehints (>=1.2.0)", "sphinx-rtd-theme (>=1.2.2)", "sphinxcontrib-jquery"] -test = ["anyio[trio]", "coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "mock (>=4)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] -trio = ["trio (<0.22)"] +doc = ["Sphinx (>=7)", "packaging", "sphinx-autodoc-typehints (>=1.2.0)"] +test = ["anyio[trio]", "coverage[toml] (>=7)", "hypothesis (>=4.0)", "psutil (>=5.9)", "pytest (>=7.0)", "pytest-mock (>=3.6.1)", "trustme", "uvloop (>=0.17)"] +trio = ["trio (>=0.22)"] [[package]] name = "argcomplete" @@ -217,17 +217,17 @@ uvloop = ["uvloop (>=0.15.2)"] [[package]] name = "boto3" -version = "1.28.30" +version = "1.28.38" description = "The AWS SDK for Python" optional = false python-versions = ">= 3.7" files = [ - {file = "boto3-1.28.30-py3-none-any.whl", hash = "sha256:e095ede98d3680e65966ab71f273b7d86938f5d853773ef96f4cb646277c2a4b"}, - {file = "boto3-1.28.30.tar.gz", hash = "sha256:2b509a959966a572f15db5768a18066ce1f53022ac53fca9421c620219fa3998"}, + {file = "boto3-1.28.38-py3-none-any.whl", hash = "sha256:dae0bc5548b39d8dfcf4167d9a238ab899a0491c11c5e77934db71b3ecf34752"}, + {file = "boto3-1.28.38.tar.gz", hash = "sha256:cdb466e51ebe4c99640269d88d5450328271437d58e6ce089690d0485bef6174"}, ] [package.dependencies] -botocore = ">=1.31.30,<1.32.0" +botocore = ">=1.31.38,<1.32.0" jmespath = ">=0.7.1,<2.0.0" s3transfer = ">=0.6.0,<0.7.0" @@ -236,13 +236,13 @@ crt = ["botocore[crt] (>=1.21.0,<2.0a0)"] [[package]] name = "botocore" -version = "1.31.30" +version = "1.31.38" description = "Low-level, data-driven core of boto 3." optional = false python-versions = ">= 3.7" files = [ - {file = "botocore-1.31.30-py3-none-any.whl", hash = "sha256:269f20dcadd8dfd0c26d0e6fbceb84814ff6638ff3aafcc5324b9fb9949a7051"}, - {file = "botocore-1.31.30.tar.gz", hash = "sha256:3cf6a9d7621b897c9ff23cd02113826141b3dd3d7e90273b661efc4dc05f84e2"}, + {file = "botocore-1.31.38-py3-none-any.whl", hash = "sha256:86a4c253bba046f775e07f6585ff6c3d75c21a21c171e5bfcf68bc59f29d7b4c"}, + {file = "botocore-1.31.38.tar.gz", hash = "sha256:b02de7898f0a7de0f6569be1c87046035a974006c31fd641f4b97a8dba1fad21"}, ] [package.dependencies] @@ -380,13 +380,13 @@ ujson = ["ujson (>=5.4.0,<6.0.0)"] [[package]] name = "celery" -version = "5.3.1" +version = "5.3.3" description = "Distributed Task Queue." optional = false python-versions = ">=3.8" files = [ - {file = "celery-5.3.1-py3-none-any.whl", hash = "sha256:27f8f3f3b58de6e0ab4f174791383bbd7445aff0471a43e99cfd77727940753f"}, - {file = "celery-5.3.1.tar.gz", hash = "sha256:f84d1c21a1520c116c2b7d26593926581191435a03aa74b77c941b93ca1c6210"}, + {file = "celery-5.3.3-py3-none-any.whl", hash = "sha256:d65c0be70d0949fcda8893876a071a7cfd9f248f9ad92e1919845e5cbc268db7"}, + {file = "celery-5.3.3.tar.gz", hash = "sha256:bac90ef99b70b9b5b5d4cfcebf6f1ab5168b86c6120bc7c5814cd8234dfd9381"}, ] [package.dependencies] @@ -395,14 +395,14 @@ click = ">=8.1.2,<9.0" click-didyoumean = ">=0.3.0" click-plugins = ">=1.1.1" click-repl = ">=0.2.0" -kombu = ">=5.3.1,<6.0" +kombu = ">=5.3.2,<6.0" python-dateutil = ">=2.8.2" tzdata = ">=2022.7" vine = ">=5.0.0,<6.0" [package.extras] -arangodb = ["pyArango (>=2.0.1)"] -auth = ["cryptography (==41.0.1)"] +arangodb = ["pyArango (>=2.0.2)"] +auth = ["cryptography (==41.0.3)"] azureblockblob = ["azure-storage-blob (>=12.15.0)"] brotli = ["brotli (>=1.0.0)", "brotlipy (>=0.7.0)"] cassandra = ["cassandra-driver (>=3.25.0,<4)"] @@ -422,7 +422,7 @@ msgpack = ["msgpack (==1.0.5)"] pymemcache = ["python-memcached (==1.59)"] pyro = ["pyro4 (==4.82)"] pytest = ["pytest-celery (==0.0.0)"] -redis = ["redis (>=4.5.2,!=4.5.5)"] +redis = ["redis (>=4.5.2,!=4.5.5,<5.0.0)"] s3 = ["boto3 (>=1.26.143)"] slmq = ["softlayer-messaging (>=1.0.3)"] solar = ["ephem (==4.1.4)"] @@ -1380,13 +1380,13 @@ idna = ">=2.0.0" [[package]] name = "faker" -version = "19.3.0" +version = "19.3.1" description = "Faker is a Python package that generates fake data for you." optional = false python-versions = ">=3.8" files = [ - {file = "Faker-19.3.0-py3-none-any.whl", hash = "sha256:bee54278d6e1289573317604ab6f4782acca724396bf261eaf1890de228e553d"}, - {file = "Faker-19.3.0.tar.gz", hash = "sha256:7d6ed00de3eef9bd57504500c67ee034cab959e4248f9c24aca33e08af82ca93"}, + {file = "Faker-19.3.1-py3-none-any.whl", hash = "sha256:e2722fdf622cf24e974aaba15a3dee97a6f8b98d869bd827ff1af9c87695af46"}, + {file = "Faker-19.3.1.tar.gz", hash = "sha256:a6624d9574623bb27dfca33fff94581cd7b23b562901db8ad59acbde9a52543e"}, ] [package.dependencies] @@ -1412,18 +1412,18 @@ dev = ["jupyterlab", "matplotlib", "nbdev (>=0.2.39)", "numpy", "pandas", "pillo [[package]] name = "filelock" -version = "3.12.2" +version = "3.12.3" description = "A platform independent file lock." optional = false -python-versions = ">=3.7" +python-versions = ">=3.8" files = [ - {file = "filelock-3.12.2-py3-none-any.whl", hash = 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description = "" authors = ["Ian Eaves ", "Edward Louth "] license = "Elastic-2.0" @@ -38,7 +38,8 @@ django-storages = "^1.13.2" ghapi = "^1.0.3" jwt = "^1.3.1" grai-graph = "^0.2.5-alpha3" -grai-schemas = "^0.2.0" +grai-schemas = "^0.2.4" +grai-client = "^0.3.2" grai-source-bigquery = "^0.2.0" grai-source-dbt = "^0.3.1" grai-source-dbt-cloud = "^0.1.0" diff --git a/grai-server/app/the_guide/settings/__init__.py b/grai-server/app/the_guide/settings/__init__.py index f2d1a4c9f..71357d314 100644 --- a/grai-server/app/the_guide/settings/__init__.py +++ b/grai-server/app/the_guide/settings/__init__.py @@ -1 +1 @@ -from ..settings import base +from ..settings import base, dev, prod, celery diff --git a/grai-server/app/workspaces/sample_data/bigquery_edges.yml b/grai-server/app/workspaces/sample_data/bigquery_edges.yml index 9d0a9bd2a..9b09c82f8 100644 --- a/grai-server/app/workspaces/sample_data/bigquery_edges.yml +++ b/grai-server/app/workspaces/sample_data/bigquery_edges.yml @@ -1,9 +1,10 @@ version: v1 -type: Edge +type: SourceEdge spec: name: prod.customers namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.customers namespace: prod @@ -16,11 +17,12 @@ spec: edge_type: TableToTable --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.customers.id namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.customers.id namespace: prod @@ -33,11 +35,12 @@ spec: edge_type: TableToColumn --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.customers.first_name namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.customers.first_name namespace: prod @@ -54,11 +57,12 @@ spec: preserves_unique: true --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.customers.last_name namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.customers.last_name namespace: prod @@ -75,11 +79,12 @@ spec: preserves_unique: true --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.orders namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.orders namespace: prod @@ -92,11 +97,12 @@ spec: edge_type: TableToTable --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.orders.id namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.orders.id namespace: prod @@ -113,11 +119,12 @@ spec: preserves_unique: true --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.orders.user_id namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.orders.user_id namespace: prod @@ -134,11 +141,12 @@ spec: preserves_unique: true --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.orders.order_date namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.orders.order_date namespace: prod @@ -151,11 +159,12 @@ spec: edge_type: TableToColumn --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.orders.status namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.orders.status namespace: prod @@ -172,11 +181,12 @@ spec: preserves_unique: true --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.payments namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.payments namespace: prod @@ -189,11 +199,12 @@ spec: edge_type: TableToTable --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.payments.id namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: prod.payments.id namespace: prod @@ -210,11 +221,12 @@ spec: preserves_unique: true --- version: v1 -type: Edge +type: SourceEdge spec: name: prod.payments.order_id namespace: default - data_source: demo-edges + data_source: + name: demo-edges source: name: 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