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Possibility to download all GEO data locally. #28

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bgriffen opened this issue Jul 15, 2017 · 1 comment
Open

Possibility to download all GEO data locally. #28

bgriffen opened this issue Jul 15, 2017 · 1 comment
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@bgriffen
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bgriffen commented Jul 15, 2017 •
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Great library! Just wondering if it is possible to allow bulk downloading of the GEO dataset from the outset rather than when it is queried. I want to speed up development times and having to download the files as they are needed takes up 90% of the analysis time. It would be great if there was a way to just dump all the GSE files into one folder. I understand this is quite large but if I have the space -- can this be added? I looked at ftp://ftp.ncbi.nlm.nih.gov/geo/series/ but I just want the _family.soft.gz files as they are used by GEOparse in a single folder.
@guma44
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guma44 commented Jul 17, 2017

Hi,

What would you think about a script to download the data?

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@bgriffen @guma44