From da03ae336527cf0223e9e7f4b04540d35b597277 Mon Sep 17 00:00:00 2001
From: GitHub Actions <actions@github.com>
Date: Tue, 3 Sep 2024 00:19:23 +0000
Subject: [PATCH] site deploy

Auto-generated via {sandpaper}
Source  : 81eeb9a53b10c4b767bdd030c0a340485b0751af
Branch  : md-outputs
Author  : GitHub Actions <actions@github.com>
Time    : 2024-07-08 11:43:28 +0000
Message : markdown source builds

Auto-generated via {sandpaper}
Source  : b22497cb97fa18a9f56b9b5c57dcd41879efc3e2
Branch  : main
Author  : Naupaka Zimmerman <naupaka@gmail.com>
Time    : 2024-05-14 19:58:23 +0000
Message : Merge pull request #275 from datacarpentry/update/packages

Update 13 packages
---
 00-introduction.html                         |  8 ++++----
 01-r-basics.html                             |  2 +-
 02-data-prelude.html                         |  2 +-
 03-basics-factors-dataframes.html            | 12 ++++++------
 04-bioconductor-vcfr.html                    |  2 +-
 05-dplyr.html                                |  2 +-
 06-data-visualization.html                   |  2 +-
 07-r-help.html                               |  2 +-
 404.html                                     |  4 ++--
 CODE_OF_CONDUCT.html                         |  2 +-
 LICENSE.html                                 |  2 +-
 aio.html                                     | 20 ++++++++++----------
 discuss.html                                 |  2 +-
 images.html                                  |  4 ++--
 index.html                                   | 10 +++++-----
 instructor-notes.html                        |  4 ++--
 instructor/00-introduction.html              |  8 ++++----
 instructor/01-r-basics.html                  |  2 +-
 instructor/02-data-prelude.html              |  2 +-
 instructor/03-basics-factors-dataframes.html | 12 ++++++------
 instructor/04-bioconductor-vcfr.html         |  2 +-
 instructor/05-dplyr.html                     |  2 +-
 instructor/06-data-visualization.html        |  2 +-
 instructor/07-r-help.html                    |  2 +-
 instructor/404.html                          |  4 ++--
 instructor/CODE_OF_CONDUCT.html              |  2 +-
 instructor/LICENSE.html                      |  2 +-
 instructor/aio.html                          | 20 ++++++++++----------
 instructor/discuss.html                      |  2 +-
 instructor/images.html                       |  4 ++--
 instructor/index.html                        | 10 +++++-----
 instructor/instructor-notes.html             |  4 ++--
 instructor/key-points.html                   |  4 ++--
 instructor/profiles.html                     |  4 ++--
 instructor/reference.html                    |  2 +-
 key-points.html                              |  4 ++--
 pkgdown.yml                                  |  2 +-
 profiles.html                                |  4 ++--
 reference.html                               |  2 +-
 39 files changed, 91 insertions(+), 91 deletions(-)

diff --git a/00-introduction.html b/00-introduction.html
index b8b03dd0..88fecdb3 100644
--- a/00-introduction.html
+++ b/00-introduction.html
@@ -704,7 +704,7 @@ <h3 class="callout-title">Exercise: Work interactively in R</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>You will get the same output you did as when you ran
 <code>getwd()</code> from the source. You can run any command in the
@@ -796,7 +796,7 @@ <h3 class="callout-title">Exercise: What do these functions do?</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ul><li>
 <code>dir()</code> # Lists files in the working directory</li>
@@ -941,7 +941,7 @@ <h3 class="callout-title">Exercise: Searching for R functions</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>While your search results may return several tests, we list a few you
 might find:</p>
@@ -1043,7 +1043,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/00-introduction.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/01-r-basics.html b/01-r-basics.html
index bff537c7..c88a3b6d 100644
--- a/01-r-basics.html
+++ b/01-r-basics.html
@@ -1825,7 +1825,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/01-r-basics.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/02-data-prelude.html b/02-data-prelude.html
index 63398b35..c5cc51d0 100644
--- a/02-data-prelude.html
+++ b/02-data-prelude.html
@@ -654,7 +654,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/02-data-prelude.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/03-basics-factors-dataframes.html b/03-basics-factors-dataframes.html
index 06170f3c..eb0159a4 100644
--- a/03-basics-factors-dataframes.html
+++ b/03-basics-factors-dataframes.html
@@ -491,7 +491,7 @@ <h3 class="callout-title">Exercise: Review the arguments of the
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: upper-alpha"><li><p>The <code>read.csv()</code> function has the argument ‘header’
 set to TRUE by default, this means the function always assumes the first
@@ -699,7 +699,7 @@ <h3 class="callout-title">Exercise: Revisiting modes and classess</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb7">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1005,7 +1005,7 @@ <h3 class="callout-title">Exercise: Subsetting a data frame</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: lower-alpha"><li>
 </li></ol><div class="codewrapper sourceCode" id="cb30">
@@ -1690,7 +1690,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb84">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1836,7 +1836,7 @@ <h3 class="callout-title">Exercise: Putting it all together - data frames</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5"> Show me the solution </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb91">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -1987,7 +1987,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/03-basics-factors-dataframes.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/04-bioconductor-vcfr.html b/04-bioconductor-vcfr.html
index 8c3d86db..5d9043c1 100644
--- a/04-bioconductor-vcfr.html
+++ b/04-bioconductor-vcfr.html
@@ -619,7 +619,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/04-bioconductor-vcfr.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/05-dplyr.html b/05-dplyr.html
index 8d8a47eb..36c2ed97 100644
--- a/05-dplyr.html
+++ b/05-dplyr.html
@@ -1587,7 +1587,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/05-dplyr.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/06-data-visualization.html b/06-data-visualization.html
index a6b78c53..198aa79d 100644
--- a/06-data-visualization.html
+++ b/06-data-visualization.html
@@ -1288,7 +1288,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/06-data-visualization.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/07-r-help.html b/07-r-help.html
index be537cfc..a5c6fe5a 100644
--- a/07-r-help.html
+++ b/07-r-help.html
@@ -600,7 +600,7 @@ <h3 class="callout-title">Key Points</h3>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/07-r-help.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/404.html b/404.html
index 9a4d7e4b..20035b39 100644
--- a/404.html
+++ b/404.html
@@ -396,8 +396,8 @@ <h1>Page not found</h1>
   "url": "https://datacarpentry.github.io/genomics-r-intro/404.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/404.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/CODE_OF_CONDUCT.html b/CODE_OF_CONDUCT.html
index 0e62a849..63beb6d6 100644
--- a/CODE_OF_CONDUCT.html
+++ b/CODE_OF_CONDUCT.html
@@ -413,7 +413,7 @@ <h1>Contributor Code of Conduct</h1>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/CODE_OF_CONDUCT.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/LICENSE.html b/LICENSE.html
index b7089069..35f45616 100644
--- a/LICENSE.html
+++ b/LICENSE.html
@@ -461,7 +461,7 @@ <h1>Licenses</h1>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/LICENSE.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/aio.html b/aio.html
index 393b6a1f..2ac432aa 100644
--- a/aio.html
+++ b/aio.html
@@ -769,7 +769,7 @@ <h3 class="callout-title">Exercise: Work interactively in R</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <p>You will get the same output you did as when you ran
 <code>getwd()</code> from the source. You can run any command in the
@@ -865,7 +865,7 @@ <h3 class="callout-title">Exercise: What do these functions do?</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
 <div class="accordion-body">
 <ul>
 <li>
@@ -1018,7 +1018,7 @@ <h3 class="callout-title">Exercise: Searching for R functions</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <p>While your search results may return several tests, we list a few you
 might find:</p>
@@ -3094,7 +3094,7 @@ <h3 class="callout-title">Exercise: Review the arguments of the
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution1" aria-expanded="false" aria-controls="collapseSolution1">
   <h4 class="accordion-header" id="headingSolution1"> Show me the solution </h4>
 </button>
-<div id="collapseSolution1" class="accordion-collapse collapse" aria-labelledby="headingSolution1" data-bs-parent="#accordionSolution1">
+<div id="collapseSolution1" class="accordion-collapse collapse" data-bs-parent="#accordionSolution1" aria-labelledby="headingSolution1">
 <div class="accordion-body">
 <ol style="list-style-type: upper-alpha">
 <li><p>The <code>read.csv()</code> function has the argument ‘header’
@@ -3309,7 +3309,7 @@ <h3 class="callout-title">Exercise: Revisiting modes and classess</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution2" aria-expanded="false" aria-controls="collapseSolution2">
   <h4 class="accordion-header" id="headingSolution2"> Show me the solution </h4>
 </button>
-<div id="collapseSolution2" class="accordion-collapse collapse" aria-labelledby="headingSolution2" data-bs-parent="#accordionSolution2">
+<div id="collapseSolution2" class="accordion-collapse collapse" data-bs-parent="#accordionSolution2" aria-labelledby="headingSolution2">
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 <div class="codewrapper sourceCode" id="cb7">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -3625,7 +3625,7 @@ <h3 class="callout-title">Exercise: Subsetting a data frame</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution3" aria-expanded="false" aria-controls="collapseSolution3">
   <h4 class="accordion-header" id="headingSolution3"> Show me the solution </h4>
 </button>
-<div id="collapseSolution3" class="accordion-collapse collapse" aria-labelledby="headingSolution3" data-bs-parent="#accordionSolution3">
+<div id="collapseSolution3" class="accordion-collapse collapse" data-bs-parent="#accordionSolution3" aria-labelledby="headingSolution3">
 <div class="accordion-body">
 <ol style="list-style-type: lower-alpha"><li>
 </li></ol>
@@ -4332,7 +4332,7 @@ <h3 class="callout-title">Exercise</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution4" aria-expanded="false" aria-controls="collapseSolution4">
   <h4 class="accordion-header" id="headingSolution4"> Show me the solution </h4>
 </button>
-<div id="collapseSolution4" class="accordion-collapse collapse" aria-labelledby="headingSolution4" data-bs-parent="#accordionSolution4">
+<div id="collapseSolution4" class="accordion-collapse collapse" data-bs-parent="#accordionSolution4" aria-labelledby="headingSolution4">
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 <div class="codewrapper sourceCode" id="cb84">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -4484,7 +4484,7 @@ <h3 class="callout-title">Exercise: Putting it all together - data frames</h3>
 <button class="accordion-button solution-button collapsed" type="button" data-bs-toggle="collapse" data-bs-target="#collapseSolution5" aria-expanded="false" aria-controls="collapseSolution5">
   <h4 class="accordion-header" id="headingSolution5"> Show me the solution </h4>
 </button>
-<div id="collapseSolution5" class="accordion-collapse collapse" aria-labelledby="headingSolution5" data-bs-parent="#accordionSolution5">
+<div id="collapseSolution5" class="accordion-collapse collapse" data-bs-parent="#accordionSolution5" aria-labelledby="headingSolution5">
 <div class="accordion-body">
 <div class="codewrapper sourceCode" id="cb91">
 <h3 class="code-label">R<i aria-hidden="true" data-feather="chevron-left"></i><i aria-hidden="true" data-feather="chevron-right"></i>
@@ -7238,8 +7238,8 @@ <h3 class="callout-title">Key Points</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/aio.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/aio.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/discuss.html b/discuss.html
index 3e41cd18..4d59a09a 100644
--- a/discuss.html
+++ b/discuss.html
@@ -406,7 +406,7 @@ <h1>Discussion</h1>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/discuss.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/images.html b/images.html
index 44a35280..3510d806 100644
--- a/images.html
+++ b/images.html
@@ -545,8 +545,8 @@ <h3 id="07-r-help-figure-1">Figure 1</h3>
   "url": "https://datacarpentry.github.io/genomics-r-intro/images.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/images.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/index.html b/index.html
index 998ae8bf..acd7627b 100644
--- a/index.html
+++ b/index.html
@@ -430,7 +430,7 @@ <h3 class="accordion-header" id="headingSpoiler1">
   Windows
   </h3>
 </button>
-<div id="collapseSpoiler1" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler1" aria-labelledby="headingSpoiler1">
+<div id="collapseSpoiler1" class="accordion-collapse collapse" aria-labelledby="headingSpoiler1" data-bs-parent="#accordionSpoiler1">
 <div class="accordion-body">
 <p>Follow the CRAN instructions for downloading the <a href="https://cran.r-project.org/bin/windows/base/" class="external-link">Windows
 Binary</a></p>
@@ -446,7 +446,7 @@ <h3 class="accordion-header" id="headingSpoiler2">
   Mac OS X
   </h3>
 </button>
-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
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-<div id="collapseSpoiler2" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler2" aria-labelledby="headingSpoiler2">
+<div id="collapseSpoiler2" class="accordion-collapse collapse" aria-labelledby="headingSpoiler2" data-bs-parent="#accordionSpoiler2">
 <div class="accordion-body">
 <p>Follow the CRAN instructions for downloading the <a href="https://cran.r-project.org/bin/macosx/" class="external-link">MacOS .pkg file</a>;
 ensure that you download the package that corresponds to your Mac CPU
@@ -548,7 +548,7 @@ <h3 class="accordion-header" id="headingSpoiler3">
   Linux
   </h3>
 </button>
-<div id="collapseSpoiler3" class="accordion-collapse collapse" data-bs-parent="#accordionSpoiler3" aria-labelledby="headingSpoiler3">
+<div id="collapseSpoiler3" class="accordion-collapse collapse" aria-labelledby="headingSpoiler3" data-bs-parent="#accordionSpoiler3">
 <div class="accordion-body">
 <p>Follow the CRAN instructions for your <a href="https://cran.r-project.org/bin/linux/" class="external-link">Linux Distribution</a>; The
 instructions for Ubuntu are <a href="https://cran.r-project.org/bin/linux/ubuntu/" class="external-link">found here</a>.</p>
@@ -612,8 +612,8 @@ <h3 class="accordion-header" id="headingSpoiler3">
   "url": "https://datacarpentry.github.io/genomics-r-intro/instructor/index.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/index.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
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diff --git a/instructor/instructor-notes.html b/instructor/instructor-notes.html
index 7767f649..81068525 100644
--- a/instructor/instructor-notes.html
+++ b/instructor/instructor-notes.html
@@ -452,8 +452,8 @@ <h1>Instructor Notes</h1>
   "url": "https://datacarpentry.github.io/genomics-r-intro/instructor/instructor-notes.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/instructor-notes.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
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diff --git a/instructor/key-points.html b/instructor/key-points.html
index d9ade55e..f484d4d6 100644
--- a/instructor/key-points.html
+++ b/instructor/key-points.html
@@ -513,8 +513,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/genomics-r-intro/instructor/key-points.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/key-points.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
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diff --git a/instructor/profiles.html b/instructor/profiles.html
index a30aa524..42d19456 100644
--- a/instructor/profiles.html
+++ b/instructor/profiles.html
@@ -364,8 +364,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-r-intro/instructor/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/profiles.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/instructor/reference.html b/instructor/reference.html
index e17c9e2d..32f873f1 100644
--- a/instructor/reference.html
+++ b/instructor/reference.html
@@ -407,7 +407,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/instructor/reference.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/key-points.html b/key-points.html
index f7a37f74..be1abcb9 100644
--- a/key-points.html
+++ b/key-points.html
@@ -511,8 +511,8 @@ <h2 class="accordion-header" id="flush-headingTwelve">
   "url": "https://datacarpentry.github.io/genomics-r-intro/key-points.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/key-points.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/pkgdown.yml b/pkgdown.yml
index f7e25b4d..4614dcbb 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -2,4 +2,4 @@ pandoc: 3.1.11
 pkgdown: 2.1.0
 pkgdown_sha: ~
 articles: {}
-last_built: 2024-08-27T00:19Z
+last_built: 2024-09-03T00:19Z
diff --git a/profiles.html b/profiles.html
index d96c35ef..4811373c 100644
--- a/profiles.html
+++ b/profiles.html
@@ -364,8 +364,8 @@ <h1>Learner Profiles</h1>
   "url": "https://datacarpentry.github.io/genomics-r-intro/profiles.html",
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/profiles.html",
   "dateCreated": "2018-03-12",
-  "dateModified": "2024-08-27",
-  "datePublished": "2024-08-27"
+  "dateModified": "2024-09-03",
+  "datePublished": "2024-09-03"
 }
 
   </script><script>
diff --git a/reference.html b/reference.html
index 842f4dce..9965a8ca 100644
--- a/reference.html
+++ b/reference.html
@@ -405,7 +405,7 @@ <h1>Glossary</h1>
   "identifier": "https://datacarpentry.github.io/genomics-r-intro/reference.html",
   "dateCreated": "2018-03-12",
   "dateModified": "2024-07-02",
-  "datePublished": "2024-08-27"
+  "datePublished": "2024-09-03"
 }
 
   </script><script>