Mira raises KeyError: 'value' when parsing BIOMD0000000949

[djinnome]

I decided to go through all the Biomodels AMRs and see if I could load them, and got this mira error:

../../mira/mira/sources/askenet/petrinet.py:106: in template_model_from_askenet_json
 
    param_values = {
>       p['id']: p['value'] for p in ode_semantics.get('parameters', [])
    }
E   KeyError: 'value'

../../mira/mira/sources/askenet/petrinet.py:107: KeyError

The problem appears to be that the AMR does not have a value for the baseline_dummy_variable parameter:

https://github.com/DARPA-ASKEM/experiments/blob/953808422c72dd0ab91dc7114ff3e581dfef0dac/thin-thread-examples/mira_v2/biomodels/BIOMD0000000949/model_askenet.json#L339-L346

Even though the underlying SBML model does contain a value for the parameter

https://github.com/DARPA-ASKEM/experiments/blob/953808422c72dd0ab91dc7114ff3e581dfef0dac/thin-thread-examples/mira_v2/biomodels/BIOMD0000000949/src/main/Chitnis2008.xml#L853

[djinnome]

Other Biomodels that display the same phenotype are:

• BIOMD0000000956
• BIOMD0000000960
• BIOMD0000000982
• BIOMD0000000962
• BIOMD0000000969
• BIOMD0000000977
• BIOMD0000000983
• BIOMD0000000991
• BIOMD0000000963
• BIOMD0000000978
• MODEL1805220001
• MODEL2111170001

[bgyori]

See https://github.com/DARPA-ASKEM/experiments/tree/update_examples/thin-thread-examples/mira_v2/biomodels