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New model source: JWS Online #270

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cthoyt opened this issue Jan 2, 2024 · 0 comments
Open

New model source: JWS Online #270

cthoyt opened this issue Jan 2, 2024 · 0 comments

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@cthoyt
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cthoyt commented Jan 2, 2024

https://jjj.bio.vu.nl

JWS Online has various biochemical models, like the Biomodels Database. From the homepage:

JWS Online aims to provide a service to the systems biology community by:

  1. giving access to a database of curated models of biological systems
  2. allowing the users to run these models in a web browser via an accessible interface
  3. providing assistance to manuscript reviewers by storing and curating kinetic models awaiting publication

JWS Online serves an important role as a repository of published models, which often undergo modification to reflect updates in the standardised notation of metabolites and enzymes, and a direct link between model and experimental data is provided.

JWS Online now uses a database implementation with a native format that mirrors the SBML specification. This minimises changes in SBML structure during the upload-edit-save cycle. JWS Online supports uploading and modification of existing models in SBML or JWS format.

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