-
Notifications
You must be signed in to change notification settings - Fork 628
/
other-markdown.Rmd
248 lines (159 loc) · 10.5 KB
/
other-markdown.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
# Other markdown files {#sec-other-markdown}
```{r, echo = FALSE}
source("common.R")
```
In this chapter we highlight two files that are conventionally used to provide some package-level documentation.
These two are important, because they are featured on both the CRAN landing page and the pkgdown site for a package:
- `README.md`, which describes what the package does (@sec-readme).
The `README` plays an especially important role on GitHub or similar platforms.
- `NEWS.md`, which describes how the package has changed over time (@sec-news).
Even if your package is intended for a very limited audience and might not ever be released on CRAN, these files can be very useful.
These two files don't have to be written in Markdown, but they can be.
In keeping with our practices for help topics and vignettes, it's our strong recommendation and it's what we describe here.
## `README` {#sec-readme}
First, we'll talk about the role of the `README` file and we leave off the file extension, until we're ready to talk about mechanics.
The goal of the `README` is to answer the following questions about your package:
- Why should I use it?
- How do I use it?
- How do I get it?
The `README` file is a long-established convention in software, going back decades.
Some of its traditional content is found elsewhere in an R package, for example, we use the `DESCRIPTION` file to document authorship and licensing.
When you write your `README`, try to put yourself in the shoes of someone who's come across your package and is trying to figure out if it solves a problem they have.
If they decide that your package looks promising, the `README` should also show them how to install it and how to do one or two basic tasks.
Here's a good template for `README`:
1. A paragraph that describes the high-level purpose of the package.
2. An example that shows how to use the package to solve a simple problem.
3. Installation instructions, giving code that can be copied and pasted into R.
4. An overview that describes the main components of the package.
For more complex packages, this will point to vignettes for more details.
This is also a good place to describe how your package fits into the ecosystem of its target domain.
### `README.Rmd` and `README.md`
As mentioned above, we prefer to write `README` in Markdown, i.e. to have `README.md`.
This will be rendered as HTML and displayed in several important contexts:
- The repository home page, if you maintain your package on GitHub (or a similar host).
- [https://github.com/tidyverse/dplyr](https://github.com/tidyverse/dplyr#readme)
- On CRAN, if you release your package there.
- <https://cran.r-project.org/web/packages/dplyr/index.html>
Notice the hyperlinked "README" under "Materials".
- As the home page of your pkgdown site, if you have one.
- <https://dplyr.tidyverse.org>
Given that it's best to include a couple of examples in `README.md`, ideally you would generate it with R Markdown.
That is, it works well to have `README.Rmd` as the main source file, which you then render to `README.md`.
The easiest way to get started is to use `usethis::use_readme_rmd()`.[^other-markdown-1]
This creates a template `README.Rmd` and adds it to `.Rbuildignore`, since only `README.md` should be included in the package bundle.
The template looks like this:
[^other-markdown-1]: If it really doesn't make sense to include any executable code chunks, `usethis::use_readme_md()` is similar, except that it gives you a basic `README.md` file.
````{verbatim, lang = "markdown"}
---
output: github_document
---
<!-- README.md is generated from README.Rmd. Please edit that file -->
```{r, include = FALSE}
knitr::opts_chunk$set(
collapse = TRUE,
comment = "#>",
fig.path = "man/figures/README-",
out.width = "100%"
)
```
# somepackage
<!-- badges: start -->
<!-- badges: end -->
The goal of somepackage is to ...
## Installation
You can install the development version of somepackage from [GitHub](https://github.com/) with:
``` r
# install.packages("devtools")
devtools::install_github("jane/somepackage")
```
## Example
This is a basic example which shows you how to solve a common problem:
```{r example}
library(somepackage)
## basic example code
```
What is special about using `README.Rmd` instead of just `README.md`?
You can include R chunks like so:
```{r cars}
summary(cars)
```
You'll still need to render `README.Rmd` regularly, to keep `README.md` up-to-date.
`devtools::build_readme()` is handy for this.
You can also embed plots, for example:
```{r pressure, echo = FALSE}
plot(pressure)
```
In that case, don't forget to commit and push the resulting figure files, so they display on GitHub and CRAN.
````
A few things to note about this starter `README.Rmd`:
- It renders to [GitHub Flavored Markdown](https://github.github.com/gfm/).
- It includes a comment to remind you to edit `README.Rmd`, not `README.md`.
- It sets up our recommended knitr options, including saving images to `man/figures/README-` which ensures that they're included in your built package.
This is important so that your `README` works when it's displayed by CRAN.
- It sets up a place for future badges, such as results from automatic continuous integration checks (@sec-sw-dev-practices-ci).
Examples of functions that insert development badges:
- `usethis::use_cran_badge()` reports the current version of your package on CRAN.
- `usethis::use_coverage()` reports test coverage.
- `use_github_actions()` and friends report the `R CMD check` status of your development package.
- It includes placeholders where you should provide code for package installation and for some basic usage.
- It reminds you of key facts about maintaining your `README`.
You'll need to remember to re-render `README.Rmd` periodically and, most especially, before release.
The best function to use for this is `devtools::build_readme()`, because it is guaranteed to render `README.Rmd` against the current source code of your package.
The devtools ecosystem tries to help you keep `README.Rmd` up-to-date in two ways:
- If your package is also a Git repo, `use_readme_rmd()` automatically adds the following pre-commit hook:
``` bash
#!/bin/bash
if [[ README.Rmd -nt README.md ]]; then
echo "README.md is out of date; please re-knit README.Rmd"
exit 1
fi
```
This prevents a `git commit` if `README.Rmd` is more recently modified than `README.md`.
If the hook is preventing a commit you really want to make, you can override it with `git commit --no-verify`.
Note that Git commit hooks are not stored in the repository, so this hook needs to be added to any fresh clone.
For example, you could re-run `usethis::use_readme_rmd()` and discard the changes to `README.Rmd`.
- The release checklist placed by `usethis::use_release_issue()` includes a reminder to call `devtools::build_readme()`.
## `NEWS` {#sec-news}
The `README` is aimed at new users, whereas the `NEWS` file is aimed at existing users: it should list all the changes in each release that a user might notice or want to learn more about.
As with `README`, it's a well-established convention for open source software to have a `NEWS` file, which is also sometimes called a changelog.
As with `README`, base R tooling does not *require* that NEWS be a Markdown file, but it does allow for that and it's our strong preference.
A `NEWS.md` file is pleasant to read on GitHub, on your pkgdown site, and is reachable from your package's CRAN landing page.
We demonstrate this again with dplyr:
- `NEWS.md` in dplyr's GitHub repo:
- <https://github.com/tidyverse/dplyr/blob/main/NEWS.md>
- On CRAN, if you release your package there.
- <https://cran.r-project.org/web/packages/dplyr/index.html>
Notice the hyperlinked "NEWS" under "Materials".
- On your package site, available as the "Changelog" from the "News" dropdown menu in the main navbar:
- <https://dplyr.tidyverse.org/news/index.html>
You can use `usethis::use_news_md()` to initiate the `NEWS.md` file; many other lifecycle- and release-related functions in the devtools ecosystem will make appropriate changes to `NEWS.md` as your package evolves.
Here's a hypothetical `NEWS.md` file:
``` markdown
# foofy (development version)
* Better error message when grooving an invalid grobble (#206).
# foofy 1.0.0
## Major changes
* Can now work with all grooveable grobbles!
## Minor improvements and bug fixes
* Printing scrobbles no longer errors (@githubusername, #100).
* Wibbles are now 55% less jibbly (#200).
```
The example above demonstrates some organizing principles for `NEWS.md`:
- Use a top-level heading for each version: e.g. `# somepackage 1.0.0`.
The most recent version should go at the top.
Typically the top-most entry in `NEWS.md` of your source package will read `# somepackage (development version)`.[^other-markdown-2]
- Each change should be part of a bulleted list.
If you have a lot of changes, you might want to break them up using subheadings, `## Major changes`, `## Bug fixes`, etc.
We usually stick with a simple list until we're close to a release, at which point we organize into sections and refine the text.
It's hard to know in advance exactly what sections you'll need.
The release checklist placed by `usethis::use_release_issue()` includes a reminder to polish the `NEWS.md` file.
In that phase, it can be helpful to remember that `NEWS.md` is a user-facing record of change, in contrast to, e.g., commit messages, which are developer-facing.
- If an item is related to an issue in GitHub, include the issue number in parentheses, e.g. `(#10)`.
If an item is related to a pull request, include the pull request number and the author, e.g. `(#101, @hadley)`.
This helps an interested reader to find relevant context on GitHub and, in your pkgdown site, these issue and pull request numbers and usernames will be hyperlinks.
We generally omit the username if the contributor is already recorded in `DESCRIPTION`.
[^other-markdown-2]: pkgdown supports a few other wording choices for these headings, see more at <https://pkgdown.r-lib.org/reference/build_news.html>.
The main challenge with `NEWS.md` is getting into the habit of noting any user-visible change when you make it.
It's especially easy to forget this when accepting external contributions.
Before release, it can be useful to use your version control tooling to compare the source of the release candidate to the previous release.
This often surfaces missing `NEWS` items.