DESCRIPTION

Package: Hapi
Title: Inference of Chromosome-length Haplotypes using Genomic Data of
        Single Gamete Cells
Version: 0.0.1
Author: Ruidong Li,
	Han Qu,
	Jinfeng Chen,
	Shibo Wang,
	Le Zhang,
	Julong Wei,
	Sergio Pietro Ferrante,
	Mikeal L. Roose,
	Zhenyu Jia
Maintainer: Ruidong Li <rli012@ucr.edu>
Description: Hapi (short for Haplotyping with imperfect genotype data) is a novel easy-to-use, 
	R package for inference of chromosome-length haplotypes using a few haploid 
	gametes of an individual. The gamete genotype data may be generated from various platforms 
	including genotyping arrays and sequencing even with low-coverage. Hapi simply takes 
	genotype data of known hetSNPs in single gamete cells as input and report the high-resolution 
	haplotypes as well as confidence of each phased hetSNPs. The package also includes a module 
	allowing downstream analyses and visualization of identified crossovers in the gametes. 
Depends: R (>= 3.4.0)
License: Artistic-2.0
Encoding: UTF-8
LazyData: false
Imports: HMM, ggplot2
Suggests: knitr, testthat
VignetteBuilder: knitr
biocViews: SNP, GenomicVariation, Genetics, HiddenMarkovModel,
        SingleCell, Sequencing, Microarray
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-04-14 05:57:35 UTC; ruidong