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Error:" No contigs read in from reference file /mnt/d/DataNanoPore/reference/mtDNA_sequence.fasta #3

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malcom23 opened this issue May 5, 2023 · 0 comments
Open

Error:" No contigs read in from reference file /mnt/d/DataNanoPore/reference/mtDNA_sequence.fasta #3

malcom23 opened this issue May 5, 2023 · 0 comments

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@malcom23
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malcom23 commented May 5, 2023

hello, seems like something wrong,
I've used the mtDNA_Sequence.fasta as a reference file, downloaded from NCBI. However I'm stuck there. What is wrong?
" $baldur --rs-list $ref/bed_chr_MT.bed.gz -q10 -Q7 -M30 -T $ref/mtDNA_sequence.fasta -o $out/MT1_1 $sam/saMT1.sort.bam " (my code)
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