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Large deletions issue #4

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Lipinski-B opened this issue Mar 21, 2024 · 0 comments
Open

Large deletions issue #4

Lipinski-B opened this issue Mar 21, 2024 · 0 comments

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@Lipinski-B
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Lipinski-B commented Mar 21, 2024

Hello,

When I launch :

baldur -Q15 -T MT.fa barcode65.bam -o barcode65 -l debug

I get this error :

DEBUG - Checking for large deletions
thread 'main' panicked at 'assertion failed: x <= y', src/detailed_align.rs:142:7
stack backtrace:
   0:     0x55e7c8c75bff - std::backtrace_rs::backtrace::libunwind::trace::hf4179216f2af7039
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:93:5
   1:     0x55e7c8c75bff - std::backtrace_rs::backtrace::trace_unsynchronized::hfa14eb12e4b8ce4f
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
   2:     0x55e7c8c75bff - std::sys_common::backtrace::_print_fmt::hc81cbee2043ec868
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:65:5
   3:     0x55e7c8c75bff - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h7b2be2009a6bcba2
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:44:22
   4:     0x55e7c8c94a8e - core::fmt::write::hccee7882499b620f
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/core/src/fmt/mod.rs:1209:17
   5:     0x55e7c8c59f15 - std::io::Write::write_fmt::h69e1f37bb24a9f49
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/io/mod.rs:1682:15
   6:     0x55e7c8c759b5 - std::sys_common::backtrace::_print::h86df92192f156e4c
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:47:5
   7:     0x55e7c8c759b5 - std::sys_common::backtrace::print::h3b76d5113eea7ae3
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:34:9
   8:     0x55e7c8c6326f - std::panicking::default_hook::{{closure}}::h634bc187e8e58de8
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:267:22
   9:     0x55e7c8c62f28 - std::panicking::default_hook::h262aef5e4abfc826
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:286:9
  10:     0x55e7c8c6387b - std::panicking::rust_panic_with_hook::hedb8a8e4067bf251
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:688:13
  11:     0x55e7c8c75f11 - std::panicking::begin_panic_handler::{{closure}}::hf501de419c9dcde3
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:577:13
  12:     0x55e7c8c75d4c - std::sys_common::backtrace::__rust_end_short_backtrace::h8542e72ad556a307
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/sys_common/backtrace.rs:137:18
  13:     0x55e7c8c63422 - rust_begin_unwind
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:575:5
  14:     0x55e7c8b27b93 - core::panicking::panic_fmt::h1688e859668ba1d0
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/core/src/panicking.rs:65:14
  15:     0x55e7c8b27c6d - core::panicking::panic::h7bf13e634a0cf963
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/core/src/panicking.rs:115:5
  16:     0x55e7c8b464b4 - baldur::detailed_align::DetailedAlign::extract_deletion_allele::h5eb7418fc11141b0
  17:     0x55e7c8b34d9e - baldur::alleles::get_large_deletions::ha8b5025b673a36ef
  18:     0x55e7c8b39a47 - baldur::freq::process_large_deletions::hea53e9a0d85cbaad
  19:     0x55e7c8b5b8f2 - baldur::process::process_data::ha94482edb3528c10
  20:     0x55e7c8b32a62 - baldur::main::hf2c4e88ca612d5e1
  21:     0x55e7c8b55223 - std::sys_common::backtrace::__rust_begin_short_backtrace::h1590c2d40f6670d8
  22:     0x55e7c8b2fe5d - std::rt::lang_start::{{closure}}::h88ed8073088a32ed
  23:     0x55e7c8c58cb4 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h37feed43940ccfab
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/core/src/ops/function.rs:286:13
  24:     0x55e7c8c58cb4 - std::panicking::try::do_call::h8fe1ed7bdb58d0f5
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:483:40
  25:     0x55e7c8c58cb4 - std::panicking::try::h87c3f91ef362d0ca
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:447:19
  26:     0x55e7c8c58cb4 - std::panic::catch_unwind::hd6a68686ac8f53ed
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panic.rs:137:14
  27:     0x55e7c8c58cb4 - std::rt::lang_start_internal::{{closure}}::hdc22961783632ef0
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/rt.rs:148:48
  28:     0x55e7c8c58cb4 - std::panicking::try::do_call::h92fd045c6d8aed83
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:483:40
  29:     0x55e7c8c58cb4 - std::panicking::try::haa1526bc83feb2c9
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panicking.rs:447:19
  30:     0x55e7c8c58cb4 - std::panic::catch_unwind::hb3d0e1586c57c804
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/panic.rs:137:14
  31:     0x55e7c8c58cb4 - std::rt::lang_start_internal::hed890805d128cbd3
                               at /build/rustc-ujz1Py/rustc-1.66.1+dfsg0ubuntu1/library/std/src/rt.rs:148:20
  32:     0x55e7c8b32aa5 - main
  33:     0x7ff671b57d90 - <unknown>
  34:     0x7ff671b57e40 - __libc_start_main
  35:     0x55e7c8b27f35 - _start
  36:                0x0 - <unknown>

Please, can you tell me why, and do you have a solution?

Manny thanks in advance.
Best regards,
Boris

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