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environment.yml
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environment.yml
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name: HG_term_project
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=1_gnu
- aioeasywebdav=2.4.0=py37h89c1867_1001
- aiohttp=3.7.4.post0=py37h5e8e339_0
- alsa-lib=1.2.3=h516909a_0
- amply=0.1.4=py_0
- appdirs=1.4.4=pyh9f0ad1d_0
- asteval=0.9.23=pyhd8ed1ab_0
- async-timeout=3.0.1=py_1000
- atk-1.0=2.36.0=h3371d22_4
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=21.2.0=pyhd8ed1ab_0
- backports=1.0=py_2
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bbmap=38.90=he522d1c_1
- bcrypt=3.2.0=py37h5e8e339_1
- biopython=1.78=py37h5e8e339_2
- boltons=20.2.1=pyh9f0ad1d_0
- boto3=1.20.14=pyhd8ed1ab_0
- botocore=1.23.14=pyhd8ed1ab_0
- bowtie2=2.4.4=py37h13ad519_0
- brotlipy=0.7.0=py37h5e8e339_1001
- bucketcache=0.12.1=py37hc8dfbb8_2
- bzip2=1.0.8=h7f98852_4
- c-ares=1.17.1=h7f98852_1
- ca-certificates=2021.10.8=ha878542_0
- cachetools=4.2.4=pyhd8ed1ab_0
- cairo=1.16.0=h6cf1ce9_1008
- certifi=2021.10.8=py37h89c1867_1
- cffi=1.14.5=py37hc58025e_0
- chardet=4.0.0=py37h89c1867_1
- click=7.1.2=pyh9f0ad1d_0
- coincbc=2.10.5=hcee13e7_1
- colorama=0.4.4=pyh9f0ad1d_0
- coloredlogs=15.0=py37h89c1867_0
- colormath=3.0.0=py_2
- commonmark=0.9.1=py_0
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- cryptography=3.4.7=py37h5d9358c_0
- cycler=0.10.0=py_2
- datrie=0.8.2=py37h5e8e339_2
- dbus=1.13.6=h48d8840_2
- decorator=5.0.7=pyhd8ed1ab_0
- docutils=0.18.1=py37h89c1867_0
- dropbox=11.25.0=pyhd8ed1ab_0
- expat=2.3.0=h9c3ff4c_0
- fastqc=0.11.9=hdfd78af_1
- fftw=3.3.9=nompi_h74d3f13_101
- filechunkio=1.8=py_2
- filelock=3.4.0=pyhd8ed1ab_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.13.1=hba837de_1005
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.10.4=h0708190_1
- fribidi=1.0.10=h36c2ea0_0
- ftputil=5.0.2=pyhd8ed1ab_0
- future=0.18.2=py37h89c1867_3
- gdk-pixbuf=2.42.6=h04a7f16_0
- genomepy=0.9.3=py_0
- gettext=0.19.8.1=h0b5b191_1005
- ghostscript=9.18=1
- giflib=5.2.1=h36c2ea0_2
- gitdb=4.0.9=pyhd8ed1ab_0
- gitpython=3.1.24=pyhd8ed1ab_0
- glib=2.68.1=h9c3ff4c_0
- glib-tools=2.68.1=h9c3ff4c_0
- google-api-core=2.2.2=pyhd8ed1ab_0
- google-api-python-client=2.31.0=pyhd8ed1ab_0
- google-auth=2.3.3=pyh6c4a22f_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_0
- google-cloud-core=2.2.1=pyh6c4a22f_0
- google-cloud-storage=1.42.3=pyh6c4a22f_1
- google-crc32c=1.1.2=py37hab72019_0
- google-resumable-media=2.1.0=pyh6c4a22f_0
- googleapis-common-protos=1.53.0=py37h89c1867_1
- graphite2=1.3.13=h58526e2_1001
- graphviz=2.47.1=h85b4f2f_1
- grpcio=1.38.1=py37hb27c1af_0
- gst-plugins-base=1.18.4=hf529b03_2
- gstreamer=1.18.4=h76c114f_2
- gtk2=2.24.33=h539f30e_1
- gts=0.7.6=h64030ff_2
- harfbuzz=2.8.1=h83ec7ef_0
- htslib=1.12=h9093b5e_1
- httplib2=0.20.2=pyhd8ed1ab_1
- humanfriendly=9.1=py37h89c1867_0
- icu=68.1=h58526e2_0
- idna=2.10=pyh9f0ad1d_0
- imagemagick=7.0.11_12=pl5320hb118871_1
- importlib-metadata=4.0.1=py37h89c1867_0
- importlib_metadata=4.0.1=hd8ed1ab_0
- importlib_resources=5.4.0=pyhd8ed1ab_0
- iniconfig=1.1.1=pyh9f0ad1d_0
- ipython_genutils=0.2.0=py_1
- irep=1.1.7=pyh24bf2e0_1
- jbig=2.1=h7f98852_2003
- jinja2=2.11.3=pyh44b312d_0
- jmespath=0.10.0=pyh9f0ad1d_0
- jpeg=9d=h36c2ea0_0
- jsonschema=4.2.1=pyhd8ed1ab_0
- jupyter_core=4.9.1=py37h89c1867_1
- kiwisolver=1.3.1=py37h2527ec5_1
- krb5=1.17.2=h926e7f8_0
- lcms2=2.12=hddcbb42_0
- ld_impl_linux-64=2.35.1=hea4e1c9_2
- libblas=3.9.0=9_openblas
- libcblas=3.9.0=9_openblas
- libclang=11.1.0=default_ha53f305_0
- libcrc32c=1.1.1=h9c3ff4c_2
- libcurl=7.76.1=hc4aaa36_1
- libdeflate=1.7=h7f98852_5
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libevent=2.1.10=hcdb4288_3
- libffi=3.3=h58526e2_2
- libgcc=7.2.0=h69d50b8_2
- libgcc-ng=9.3.0=h2828fa1_19
- libgd=2.3.2=h78a0170_0
- libgfortran-ng=9.3.0=hff62375_19
- libgfortran5=9.3.0=hff62375_19
- libglib=2.68.1=h3e27bee_0
- libgomp=9.3.0=h2828fa1_19
- libiconv=1.16=h516909a_0
- liblapack=3.9.0=9_openblas
- libllvm11=11.1.0=hf817b99_2
- libnghttp2=1.43.0=h812cca2_0
- libogg=1.3.4=h7f98852_1
- libopenblas=0.3.15=pthreads_h8fe5266_0
- libopus=1.3.1=h7f98852_1
- libpng=1.6.37=h21135ba_2
- libpq=13.2=hfd2b0eb_2
- libprotobuf=3.17.2=h780b84a_1
- librsvg=2.50.5=hc3c00ef_0
- libsodium=1.0.18=h36c2ea0_1
- libssh2=1.9.0=ha56f1ee_6
- libstdcxx-ng=9.3.0=h6de172a_19
- libtiff=4.2.0=hdc55705_1
- libtool=2.4.6=h58526e2_1007
- libuuid=2.32.1=h7f98852_1000
- libvorbis=1.3.7=h9c3ff4c_0
- libwebp=1.2.0=h3452ae3_0
- libwebp-base=1.2.0=h7f98852_2
- libxcb=1.13=h7f98852_1003
- libxkbcommon=1.0.3=he3ba5ed_0
- libxml2=2.9.10=h72842e0_4
- lmfit=1.0.2=pyhd8ed1ab_0
- logbook=1.5.3=py37h5e8e339_4
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.3=h9c3ff4c_0
- lzstring=1.0.4=py_1001
- markdown=3.3.4=pyhd8ed1ab_0
- markupsafe=1.1.1=py37h5e8e339_3
- matplotlib=3.4.1=py37h89c1867_0
- matplotlib-base=3.4.1=py37hdd32ed1_0
- more-itertools=8.12.0=pyhd8ed1ab_0
- multidict=5.1.0=py37h5e8e339_1
- multiqc=1.10.1=py_0
- mysql-common=8.0.23=ha770c72_1
- mysql-connector-c=6.1.11=h6eb9d5d_1007
- mysql-libs=8.0.23=h935591d_1
- nbformat=5.1.3=pyhd8ed1ab_0
- ncurses=6.2=h58526e2_4
- networkx=2.3=py_0
- norns=0.1.5=pyh864c0ab_1
- nose=1.3.7=py_1006
- nspr=4.30=h9c3ff4c_0
- nss=3.64=hb5efdd6_0
- numpy=1.20.2=py37h038b26d_0
- oauth2client=4.1.3=py_0
- olefile=0.46=pyh9f0ad1d_1
- openjdk=10.0.2=h14c3975_1015
- openjpeg=2.4.0=hf7af979_0
- openssl=1.1.1k=h7f98852_0
- packaging=21.3=pyhd8ed1ab_0
- pandas=1.2.4=py37h219a48f_0
- pango=1.48.4=hb8ff022_1
- paramiko=2.8.0=pyhd8ed1ab_0
- pathlib=1.0.1=py37h89c1867_4
- patsy=0.5.1=py_0
- pbzip2=1.1.13=0
- pcre=8.44=he1b5a44_0
- peppy=0.31.2=pyhd8ed1ab_2
- perl=5.32.0=h36c2ea0_0
- pillow=8.1.2=py37h4600e1f_1
- pip=21.1.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkg-config=0.29.2=h36c2ea0_1008
- pluggy=1.0.0=py37h89c1867_2
- ply=3.11=py_1
- prettytable=2.4.0=pyhd8ed1ab_0
- protobuf=3.17.2=py37hcd2ae1e_0
- psutil=5.8.0=py37h5e8e339_1
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.5.1=py37h89c1867_1
- py=1.11.0=pyh6c4a22f_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pycparser=2.20=pyh9f0ad1d_2
- pyfaidx=0.5.9.5=pyh3252c3a_0
- pygments=2.8.1=pyhd8ed1ab_0
- pygraphviz=1.7=py37h0b1d2a2_0
- pynacl=1.4.0=py37h5e8e339_2
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.12.3=py37h89c1867_7
- pyqt-impl=5.12.3=py37he336c9b_7
- pyqt5-sip=4.19.18=py37hcd2ae1e_7
- pyqtchart=5.12=py37he336c9b_7
- pyqtwebengine=5.12.1=py37he336c9b_7
- pyrsistent=0.17.3=py37h5e8e339_2
- pysftp=0.2.9=py_1
- pysocks=1.7.1=py37h89c1867_3
- pytest=6.2.5=py37h89c1867_1
- python=3.7.10=hffdb5ce_100_cpython
- python-dateutil=2.8.1=py_0
- python-irodsclient=1.0.0=pyhd8ed1ab_0
- python_abi=3.7=1_cp37m
- pytz=2021.1=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyyaml=5.4.1=py37h5e8e339_0
- qt=5.12.9=hda022c4_4
- ratelimiter=1.2.0=py_1002
- readline=8.1=h46c0cb4_0
- represent=1.6.0=py37h8f50634_2
- requests=2.25.1=pyhd3deb0d_0
- rich=10.1.0=py37h89c1867_0
- rsa=4.8=pyhd8ed1ab_0
- s3transfer=0.5.0=pyhd8ed1ab_0
- samtools=1.12=h9aed4be_1
- scipy=1.6.3=py37h29e03ee_0
- seaborn=0.11.1=hd8ed1ab_1
- seaborn-base=0.11.1=pyhd8ed1ab_1
- setuptools=49.6.0=py37h89c1867_3
- simplejson=3.17.2=py37h5e8e339_2
- six=1.15.0=pyh9f0ad1d_0
- slacker=0.14.0=py_0
- smart_open=5.2.1=pyhd8ed1ab_0
- smmap=3.0.5=pyh44b312d_0
- snakemake=6.10.0=hdfd78af_0
- snakemake-minimal=6.10.0=pyhdfd78af_0
- spectra=0.0.11=py_1
- sqlite=3.35.5=h74cdb3f_0
- statsmodels=0.12.2=py37h902c9e0_0
- stone=3.2.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- tabulate=0.8.9=pyhd8ed1ab_0
- tbb=2020.2=h4bd325d_4
- tk=8.6.10=h21135ba_1
- toml=0.10.2=pyhd8ed1ab_0
- toposort=1.7=pyhd8ed1ab_0
- tornado=6.1=py37h5e8e339_1
- tqdm=4.60.0=pyhd8ed1ab_0
- traitlets=5.1.1=pyhd8ed1ab_0
- trimmomatic=0.39=hdfd78af_2
- typing-extensions=3.7.4.3=0
- typing_extensions=3.7.4.3=py_0
- ubiquerg=0.6.1=pyh9f0ad1d_0
- ucsc-bedtogenepred=377=h0b8a92a_2
- ucsc-genepredtobed=377=h0b8a92a_4
- ucsc-genepredtogtf=377=h0b8a92a_4
- ucsc-gff3togenepred=377=h0b8a92a_2
- ucsc-gtftogenepred=377=h0b8a92a_4
- uncertainties=3.1.5=pyhd8ed1ab_0
- uritemplate=3.0.1=py_0
- urllib3=1.26.4=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- wcwidth=0.2.5=pyh9f0ad1d_2
- wheel=0.36.2=pyhd3deb0d_0
- wrapt=1.12.1=py37h5e8e339_3
- xmlrunner=1.7.7=py_0
- xmltodict=0.12.0=py_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.7.2=h7f98852_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h7f98852_1
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h7f98852_1002
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.5=h516909a_1
- yaml=0.2.5=h516909a_0
- yarl=1.6.3=py37h5e8e339_2
- zipp=3.4.1=pyhd8ed1ab_0
- zlib=1.2.11=h516909a_1010
- zstd=1.4.9=ha95c52a_0
prefix: /home/panzone/miniconda3/envs/term_project