build.sh

#!/usr/bin/env bash
set -e

STAMP='default'

DOCKER_VERSION='0.10.1'
WEB_APP_VERSION='1.1.11'
HIPILER_VERSION='1.4.0'
SERVER_VERSION='1.14.8'
LIBRARY_VERSION='1.11.4'
MULTIVEC_VERSION='0.2.7'
CLODIUS_VERSION='0.19.0'
PYBBI_VERSION='0.2.2'
TIME_INTERVAL_TRACK_VERSION='0.2.0-rc.2'
LINEAR_LABELS_TRACK_VERSION='0.1.6'
LABELLED_POINTS_TRACK_VERSION='0.1.12'
BEDLIKE_TRIANGLES_TRACK_VERSION='0.1.2'
RANGE_TRACK_VERSION='0.1.1'
PILEUP_VERSION='1.1.0'
ARCS_VERSION='0.3.1'
TRANSCRIPTS_VERSION='0.2.1'
TEXT_VERSION='0.1.0'
SEQUENCE_VERSION='0.3.1'
CLINVAR_VERSION='0.2.1'
ORTHOLOGS_VERSION='0.2.1'
DYNSEQ_VERSION=0.1.3
MULTI_TILESET_VERSION=0.1.1

usage() {
  echo "USAGE: $0 -w WORKERS [-s STAMP] [-l]" >&2
  exit 1
}

while getopts 's:w:l' OPT; do
  case $OPT in
    s)
      STAMP=$OPTARG
      ;;
    w)
      WORKERS=$OPTARG
      ;;
    *)
      usage
      ;;
  esac
done

if [ -z $WORKERS ]; then
  usage
fi

set -o verbose # Keep this after the usage message to reduce clutter.

# When development settles down, consider going back to static Dockerfile.
perl -pne "s/<TIME_INTERVAL_TRACK_VERSION>/$TIME_INTERVAL_TRACK_VERSION/g; \
           s/<CLODIUS_VERSION>/$CLODIUS_VERSION/g; \
           s/<PYBBI_VERSION>/$PYBBI_VERSION/g; \
           s/<MULTIVEC_VERSION>/$MULTIVEC_VERSION/g; s/<SERVER_VERSION>/$SERVER_VERSION/g; \
           s/<WEB_APP_VERSION>/$WEB_APP_VERSION/g; s/<LIBRARY_VERSION>/$LIBRARY_VERSION/g; \
           s/<HIPILER_VERSION>/$HIPILER_VERSION/g; s/<LINEAR_LABELS_TRACK_VERSION>/$LINEAR_LABELS_TRACK_VERSION/g; \
           s/<LABELLED_POINTS_TRACK_VERSION>/$LABELLED_POINTS_TRACK_VERSION/g; \
           s/<BEDLIKE_TRIANGLES_TRACK_VERSION>/$BEDLIKE_TRIANGLES_TRACK_VERSION/g; \
           s/<RANGE_TRACK_VERSION>/$RANGE_TRACK_VERSION/g; \
           s/<PILEUP_VERSION>/$PILEUP_VERSION/g; \
           s/<ARCS_VERSION>/$ARCS_VERSION/g; \
           s/<TRANSCRIPTS_VERSION>/$TRANSCRIPTS_VERSION/g; \
           s/<TEXT_VERSION>/$TEXT_VERSION/g; \
           s/<SEQUENCE_VERSION>/$SEQUENCE_VERSION/g; \
           s/<CLINVAR_VERSION>/$CLINVAR_VERSION/g; \
           s/<MULTI_TILESET_VERSION>/$MULTI_TILESET_VERSION/g; \
           s/<DYNSEQ_VERSION>/$DYNSEQ_VERSION/g; \
           s/<ORTHOLOGS_VERSION>/$ORTHOLOGS_VERSION/g;" \
          web-context/Dockerfile.template > web-context/Dockerfile

REPO=higlass/higlass-docker
docker pull $REPO # Defaults to "latest", but just speeds up the build, so precise version doesn't matter.
# docker build --cache-from image-$STAMP \
docker build --build-arg WORKERS=$WORKERS \
           	 --platform linux/amd64 \
             --tag image-$STAMP \
             --tag ${REPO}:$DOCKER_VERSION \
             --tag ${REPO}:latest \
             web-context

rm web-context/Dockerfile # Ephemeral: We want to prevent folks from editing it by mistake.