continuous-integration-workflow.yml

name: Build and Test

# Workflow is triggered only on push to the master branch or a pull request to
# the master branch

on:
  push:
      branches: [ master ]
  pull_request:
      branches: [ master ]

jobs:
  build-and-test:
    runs-on: ubuntu-latest
    container:
      image: hoffmanlab/segway-test:latest
      env:
        SEGWAY_TEST_PYTHON_VERSION: 3

    steps:

      # Github actions runners do not have the same user permissions as jobs running in a container
      # Git will ignore .git directories with different permissions:
      # "fatal: detected dubious ownership in repository at '/github/workspace'"
      # This is the current issue: https://github.com/actions/runner/issues/2033
      # Can set 'options: --user 1001' on the container to match the UID of the Github runner, ref:
      # https://github.com/actions/runner/blob/8415f13babf8199551f817eb16b718dcdd5b31e2/images/Dockerfile#L38
      
      - uses: actions/checkout@v3
        with:
          fetch-depth: 0
      # Fix ownership of the checkout dir
      - name: Set ownership
        run: |
          chown -R $(id -u):$(id -g) $PWD
      - name: Set up Python
        uses: actions/setup-python@v4
        with:
          python-version: '3.9'
      - name: Install test dependencies
        run: |
          python3 -m pip install --upgrade pip setuptools build flake8 flake8-import-order flake8-quotes
      - name: Build repository
        run: |
          python3 -m build
      - name: Install
        run: |
          python3 -m pip install .
      - name: Run tests
        run: |
          gmtkPrint -version
          cd test && ./test_all.sh
      - name: Capture test results on failure
        if: ${{ failure () }}
        uses: actions/upload-artifact@v2
        with:
          name: test-results
          path: |
            test/**/*-changes.tar.gz
      - name: Upload build artifacts
        uses: actions/upload-artifact@v3
        with:
          name: segway-build
          path: dist/*