-
Notifications
You must be signed in to change notification settings - Fork 9
/
ChangeLog
691 lines (430 loc) · 19.9 KB
/
ChangeLog
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
commit fa9b5edfa012b710103214634e9685475fa642b2
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Release stabs 0.6-4
commit fd382c7899b10e6cb0939202000150f98a6ecef2
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Removed all code dependent on QUIC as QUIC was archived on CRAN.
commit 23b59b0b82cb8d833d8287478a891f31eed0276a
Author: Benjamin Hofner <benjamin.hofner@pei.de>
fixed type and clarified default
commit 84c889961b8ec5e5375c60b0881ba3bbbb5728d7
Author: Benjamin Hofner <benjamin.hofner@pei.de>
added tests for (stratified) subsampling
commit a30766a218d57ce92712772f1110f86f05f2c9df
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Release stabs 0.6-3
commit e241e39f6db5a5248b2e189e8ebf35cbc3cb2829
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Removed link to R-forge and added missing bracket
commit 34ab438237f607bc88486c15b5daedbe670947bd
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Start release candidate
commit 9c319fc7606c5103db0fb5b38418eb1f9e82904d
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Updated inst/CITATION
commit d0c252d102ee8655bab164bef88e203d3abb2cd4
Author: Benjamin Hofner <benjamin.hofner@pei.de>
make vignettes conditional on suggested packages (closes #24)
commit 95450a00c221d9e4cce398d2b34be79ce74142c1
Author: Benjamin Hofner <benjamin.hofner@pei.de>
load pre-saved data to avoid platform specific differences in ranomization (issue of huge.generator)
commit ee23187be488779dae47b728d1e14c3b7d01a793
Author: Benjamin Hofner <benjamin.hofner@pei.de>
try to fix failing test on appveyor
commit 9da6060076ae13561b8e84e2293a02ca84e53704
Author: Benjamin Hofner <benjamin.hofner@pei.de>
fixed typo in NEWS.Rd
commit d18e554f81eb948430c5ef6ad4467de9c4c41bcf
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Relase stabs 0.6-2
commit 43b7783c9cf416c20df9ad8ad010681dfaefed91
Author: Benjamin Hofner <benjamin.hofner@pei.de>
add donttest to speed up check time on CRAN
commit a7c01c65035e315b0871bc4818b493576b8c14a0
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Update .Rout.save of examples
commit 46253d4651155a940067da4f2de9cddb98bab4b9
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Suppress warning of glmnet
commit 36d0f06f56aba198630e916a923a6b2042581a19
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Update .Rout.save files
commit 694920aab2558e1c4b5197152fd41b9c603fc8ba
Author: Benjamin Hofner <benjamin.hofner@pei.de>
fix conditions in tests
commit 54c2fc33d679f753766ce617195765019eca21c7
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Use markup \doi for DOIs in manuals
commit 1e89301e99989e34308160b26400430231353531
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Make tests really conditional on TH.data and other packages
commit 8f3361e6554d7df692915b97e38325f45423b09a
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated README and vignette
commit 3a629a679b2c4c2e243d98b3956341f49510c619
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Added DOIs to \file{DESCRIPTION} to fulfill CRAN policies.
Release stabs 0.6-1
commit 9bc3696e66252d9713f8007716b5f8876baccc87
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Release stabs 0.6-0
commit 3a7c1448c29022d1fb4cb99bf193fadefd54e391
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Updated graphical models vignette
commit 6736a84f6818ee4a89c30a7324ebfff11a1a782c
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Make CRAN happy and fix some typos
commit aec9b67b9b94d6d6c3a83e99e2e73c01d93f1be9
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Updated affiliation
commit 46f45c916d93871fa4b2b2c925d76a18972cd6b4
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Coding issues
commit 6c29a482ac929afa8901738207c901249781429e
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Update README.md and add to package
commit 05cffb1f8f2c2aeadb8710bf3ee2703c7d7dcea8
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Include vignette for basic usage
commit fc76322f36c1ccab6a154bcfb399e98cd172109a
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Updated vignette for graphical models (previously broken)
commit a4ea8e86b9a4070f3f4b470e5177d6b7c0e71a77
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Start preparing release candidate 0.6-0
commit 985772a0a9c3dfd21c5c300b2cafe39676f3ba92
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Updated manual for QUIC based fitter
commit 7c7b30a8b309d1098983a6811968db0cf3870134
Author: Benjamin Hofner <benjamin.hofner@pei.de>
add R repository
commit e4cde5471f5893eb303c4df065abdfec8cc8dc18
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Do not treat warnings as errors
commit 37d07a2e01cd4418e7ed4ba188f0ebdfc608fcf9
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Update NEWS.Rd
commit eaa3b49bd196eac26e56e55faa3be32f5df65f5d
Author: Benjamin Hofner <benjamin.hofner@pei.de>
make sure that per default glmnet.lasso selects at maximum q variables (fixes #23)
commit aad604a7ba862da822e023f35f5b9a647fa79068
Author: Benjamin Hofner <benjamin.hofner@pei.de>
.Rbuildignore
commit 73f715f316641eb79e8d57c3a4bb9af40ed06479
Author: Benjamin Hofner <benjamin.hofner@pei.de>
added missing }
commit 8a8e31e89c32e8699516aeaf410e97ef65434181
Author: Benjamin Hofner <benjamin.hofner@pei.de>
improved manuals
commit 8ea27b7e86d44c6270729874d20978a6bbe986ee
Author: Benjamin Hofner <benjamin.hofner@pei.de>
specification of lambda not permitted for glmnet.lasso
commit 626e4ec9691c999ef4b18286c5a9440a4d8516dd
Author: Benjamin Hofner <benjamin.hofner@pei.de>
allow returned object of fit.fun to contain only a slot selected (path is optional)
commit ac209e8d335cd95376368bac512fa1dd6d100af9
Merge: e07546f 61b47ea
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Merge pull request #17 from andreyto/at_run_stabsel__check
commit e07546f446de364dcbdc26881e6306223925f264
Merge: c28d5af af88570
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Merge pull request #19 from gokceneraslan/patch-1
commit af885703e699061ee63a6f612f84c8374325df45
Author: Gökçen Eraslan <gokcen.eraslan@gmail.com>
Make fitfuns more quiet
commit 61b47ead827d1a6dae6cfaceaab2a48feab9e14c
Author: Andrey Tovchigrechko <tovchigrechkoa@medimmune.com>
Fix error True/False is expected but vector is received in assertion
commit c28d5af4ad311ae8e4ff6927ef0a1a0eca3f087c
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Update DESCRIPTION
commit 38f7be0ed53af4c111d94b2151be567d697534f2
Merge: 558809a 947cc95
Author: Benjamin Hofner <benjamin.hofner@pei.de>
Merge pull request #15 from richardbeare/TestFixes
commit 947cc9527b60770429329de7e841208971f4afc5
Author: Richard Beare <Richard.Beare@gmail.com>
rmarkdown as a dependency
commit 558809acbc1eb81df8e1506e67c1c879f0e2ea05
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Added QUIC to installed packages (on CI)
commit e2ec134e163aa6d6ae1db0786c583c9087a9b227
Merge: 39e608f 954c5f5
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Merge branch 'richardbeare-GraphTrialsB'
commit 39e608feed47d79994f2e5b49220a80baeb147e9
Author: Benjamin Hofner <benjamin.hofner@fau.de>
additionally install "enhanced" packages on travis-ci and appveyor
commit b15cb097d3bb0228ce5512c6bae058b8e10898fc
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated travis.ci
commit 954c5f5e6359d45f69ef43fe95c87cd1877538cc
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Revert .travis.yml
commit a7d65e0b4d5c0daa0d1c1b35901700096e931e77
Author: Benjamin Hofner <benjamin.hofner@fau.de>
tests for QUIC must be conditional
commit 228922b0f5d7e18046735369c586ca011cc13fe2
Author: Benjamin Hofner <benjamin.hofner@fau.de>
changed source of mboost and gamboostLSS
commit 348d8d6984395e999b5d2daa023618b69bfc0962
Author: Benjamin Hofner <benjamin.hofner@fau.de>
load QUIC in tests
commit 9085cf00d36d125cd0890f668b206954273def4e
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Fixed documentation
commit 8d592778e428ca3522b3e3ed972717571afa810f
Author: Benjamin Hofner <benjamin.hofner@fau.de>
clean up description
commit d79ad9a25824202ea3d0d772ae4e3952f4d436ee
Author: Benjamin Hofner <benjamin.hofner@fau.de>
reverted unnecessary changes and reindented lines
commit 834c6d021341fdeffe6c76dd1e3362a064096b55
Author: Richard Beare <Richard.Beare@gmail.com>
Second pass at support for graphical models in stabs, with commits squashed
commit 3bbecfa81b413469b921796e3356882779a0c35d
Author: Benjamin Hofner <benjamin.hofner@fau.de>
fix citation; closes #9
commit 481f71158116f35a6498ba41f6f09d1a1a4daeb8
Author: Benjamin Hofner <benjamin.hofner@fau.de>
replace base-learners with effects; closes #10
commit 4d0d759461fff47b77c8f021a6f203eecc400a86
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Forward graphical parameters to y-axis labels
commit b749668614bbe395f63089da830ca1d90b71f2ab
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Add test for new error handling
commit 7c00ec4d7e79a4a59ea9b8d65cab106213f189ee
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Better solution to continue stabsel after errors in folds; Fixes #2
commit c55d0159b1fb96fc9acc76eb2f236a153db3e09c
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated REAMDE.md
commit 064bd7998e244ef800af4a6b403defb7d11524bb
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated REAMDE.md
commit 7b65b0fd30506d88ad4b8685b4bc41a649bb94f9
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Fixed plot.stabsel if data is given as unnamed matrix; Fixes #6
commit ddd88e19752bbfe3aa5de6c60cd6bdbefba8eaa6
Author: Benjamin Hofner <benjamin.hofner@fau.de>
fix newly introduced bug
commit 68df6c43906ed5345f3aadbecfc275adc0a6bc43
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Fix issue when variables are dropped again from active set; Fixes #5
commit d79b001c28b12f91fa23442c818edb7ecbbbd244
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Improved determination of q; Fixes #7
commit c122889a74f3b29a609bf3b6b0575a285b8daddd
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Travis-CI: Install covr
commit ab3a1aad382b0d332f2cedeaed9796a441adaafc
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Add coverage status badge
commit ccb68645db77bd1b8e0b90cd40c506c0b728a98e
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Calculate coverage
commit 0874e5d7c0bd935a18b60700b6291186779428e8
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Improved documentation of glmnet.lasso_maxCoef
commit b147e782a96e61c8e08e24d11630109a6c724dde
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Added example for glmnet (closes #4)
commit 84a59f9334bf633d632701bd24888d0e7d0aab03
Author: Benjamin Hofner <benjamin.hofner@fau.de>
CI: Start using AppVeyor for Windows checks/builds
commit f29ce60cc7c4f756665b347ee2b89cc16d652199
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Update README.md
commit 6dd85f96788105493755304f999b90cb19ea71c7
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated NEWS.Rd and increased version number
commit f4512c588aca696d0a43fe1b5d456a8b5ddf2fb5
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Removed empty lines from DESCRIPTION
commit c8564fff20656b37be0833f294572b16eff38e0b
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Update README.md
commit c3fb7b05ff824a930e1f7066ef389d21521b8c2c
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated README.md to contain example code and help on how to add own variable selection procedures
commit 2fda69f99cb6510856734bc92ce36df681cc1f19
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated DESCRIPTION to be more informative
commit 29e7efd89d1fb5b3bb241f669f2a8df1fcefd901
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Adhere to CRAN policies regarding import of base packages (closes #3)
commit d788dd61b2df450f3c6d260eff406fbae84b9605
Author: Benjamin Hofner <benjamin.hofner@fau.de>
boosting specific changes: warn if mstop is to small
commit 1ed947a740ab19e036bdf83159c6cf0dad2aac66
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated references: Hofner et al now available at BMC Bioinformatics
commit d4852a7165e972ebe7d25a2a523efdb5e979a02c
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Update README.md
commit 3d88f8d2583f1ba4a96276371c63be26e4ccbd09
Author: Benjamin Hofner <benjamin.hofner@fau.de>
updated NEWS.Rd
commit 4017a3957d64557e1a44794c77104532abd3fc91
Author: Benjamin Hofner <benjamin.hofner@fau.de>
export check_folds()
commit 77efcc84408eafae272b5b712bf4f132ac17801e
Author: Benjamin Hofner <benjamin.hofner@fau.de>
(stabsel) continue computations even if errors in single folds occure. [fixes issue #2]
commit d81c3d78729a3c2680191652fce1f3bb90beeb87
Author: Benjamin Hofner <benjamin.hofner@fau.de>
(stabsel) added mc.preschedule = FALSE [closes issue #1]
commit 91e5e0b46ecb5a55d1b0868731efa41d9a9ac278
Author: Benjamin Hofner <benjamin.hofner@fau.de>
fixed some issues in stabsel.stabsel method
commit 953d5738b19d771130bc1eb003068e54922fbebd
Author: Benjamin Hofner <benjamin.hofner@fau.de>
improved print.stabsel method
commit a0529bc8b59c1dc45633ecc556f77b05c853c197
Author: Benjamin Hofner <benjamin.hofner@fau.de>
DESCRIPTION: make package "Description:" a sentence
commit a1cf150846c63df2259726d99144db63ceb0d73b
Author: Benjamin Hofner <benjamin.hofner@fau.de>
fixed typo, added example
commit 1545c1276a45e0b07f6dd3640e8cdf5971c60dec
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Release stabs 0.5-1
commit 5f3a2c4cc42083756af599b3b1f22be276728164
Author: Benjamin Hofner <benjamin.hofner@fau.de>
updated release SOPs
commit 75f8092d418328b87c23d89a0172ca52f7ae5de2
Author: Benjamin Hofner <benjamin.hofner@fau.de>
use requireNamespace instead of require
commit 82a0287b56d8e9dc185b8ee5a6ca4f8a6944e91a
Author: Benjamin Hofner <benjamin.hofner@fau.de>
updated NEWS.Rd
commit 7f5e2246cb170293fe3a7b5acb283bfa00d0ebb5
Author: Benjamin Hofner <benjamin.hofner@fau.de>
changed CITATION to make CRAN happy
commit 5964fe07b3426ac4df12f2aa14e5a45b12960b07
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated SOPs to reflect changed project structure
Updated .Rbuildignore and .RbuildignoreCRAN
commit 7e6de04ab60ea543ffa57f4086cc735cd4b4f06f
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated check results (.Rout.save)
commit 6a41a675d9dfe88cb27a84c71d04cedd295bf61a
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Updated to stabs 0.5-0
- updated NEWS.Rd to incorporate latest changes
- updated ChangeLog
- updated SOPs for package release
commit d2f52806c51cebc30269c100f24a5b3b2a778b2d
Author: Benjamin Hofner <benjamin.hofner@fau.de>
updated .Rbuildignore
commit 5ba43d90a2a7bc75d72d22af2ac835f79fd22bfb
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Update .travis.yml
commit 776a09d358971e7697443e0678f95bc43945cb0e
Merge: eaaff61 af789f8
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Merge branch 'master' of github.com:hofnerb/stabs
commit eaaff618706f006c3b23ec087a58607ac26524db
Author: Benjamin Hofner <benjamin.hofner@fau.de>
make tests conditional on availability of packages
commit af789f84a615ec0e353f7814ba53bdd857dac127
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Update .travis.yml
commit 14dab048a34fd5821a95eb6706f3e1bc69208b05
Author: Benjamin Hofner <benjamin.hofner@fau.de>
Update .travis.yml
commit 53f6fed009f57cdfa0aa0678d8d40553bf28ead4
Author: Benjamin Hofner <benjamin.hofner@fau.de>
updated .Rbuildignore
commit a22c9e644d3b70b21af6d8d097c8d910d3e4f8d8
Author: Benjamin Hofner <benjamin.hofner@fau.de>
added README.md
commit 40b090a5851d754fee3ec32c8cbe6cf9b42684b5
Author: Benjamin Hofner <benjamin.hofner@fau.de>
use Travis-CI
- added travis.yml
- modified .Rbuildignore
commit d97570a5fb52b285b3deb4db88d4ae0b9c02beb4
Author: Benjamin Hofner <benjamin.hofner@fau.de>
moved pkg/ to root folder
commit 764a0e5bcb367b920a14805eb68838b0d9b044b4
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added functionality to extract parameters from fitted stabsel object:
use parameters() or stabsel_parameters()
- tweaked print methods a bit
- added specifiedPFER to stabsel and stabsel_parameter objects
commit 7177021c4291994ee1e8ccead0815482ebc33819
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- fixed bug in stabsel.stabsel (call was not properly corrected)
commit 2d4a6439aa8d6ebe58cc014d13be2c9b1129a7fa
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added the function stabsel.stabsel to compute (new) parameter combinations
for a fitted stabsel object
commit c84111adabb28df4c232dbfe8f4867e8c8b3729a
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- moved selected method from mboost to stabs
- added method selected.stabsel
commit 8f1f35d3291d15cf7b0a9813b271179d412fcd24
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
updated .Rout.save files
commit 21b18f6884f4c05734abddc0a7c46e05ce6a6b78
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added reference to stability selection paper
- added CITATION file
commit f5761b259ebe4699fd3cf00b74005c397cfa7c4e
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
Added output that states the significance level
commit b12ed7a037fdc55caf5f969fc9c480e096982346
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added new lasso based fit function where the q strongest predictors
(according to the coefficient size) are selected.
commit 9efc6d915feead904286477fc0989025b55df350
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- changed output from "base-learner" to "variable"
commit 3103fe80b35b4ccd860bcb7de6bd660de1a8525f
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added manual for run_stabsel()
- changed regtest-inference.R
- fixed manual of stabsel_parameters()
commit dbd6cd2caf68550c5192b62af3eecbdb546259ac
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- exported run_stabsel to make it accessible by other packages
- stabs now supports gamboostLSS
commit 36b94379f3ef1acde2341f648115068b7da599da
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- Release Version 0.1-0
- added .Rbuildignore and .RbuildignoreCRAN
commit 8faed3ba18fc720ce2be56090114752973997a08
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added manual for subsample()
- added inst/NEWS.Rd and ChangeLog
- updated DESCRIPTION
- add Release SOPs and some helper files
commit 22a7392a9ccc49e2fbdbd36239815f4ec99bdb1c
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added parallel to NAMESPACE
commit f5d61b4bfbed0e28d262cb6cd9ea21f7aef29017
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
-updated manual
commit 7e885b839220c67715621dc85862b71e1b203215
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added stability paths to fitted model
- added subsampling method (no longer rely on mboost)
- added x- and y-labs to plot plot function
- changed default fitting function to lars.lasso
- explicitly specify packages for fit function via pkg::function
- moved all packages that can be used with stabs to "Enhances:"
- export print.stabsel
commit 19d2fb9b73eea6c38a5ece5ec3ffe1620fd7a6ed
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
- added args.fitfun to specify further arguments to the fitter
- started formula interface
commit 1ac5eb756acdecc587fd3eaec768b746ce7e6219
Author: Benjamin Hofner <hofnerb@users.noreply.github.com>
Initial version of package "stabs" which currently implements:
- a function stabsel.matrix() to fit Lasso and stepwise models directly with stability selection
- a function stabsel.mboost() to apply stability selection to a fitted boosting model
- a function stabsel_parameters() to compute the error bounds of stability selection
Additionally, print and plot functions are implemented.