diff --git a/src/cli/custom-template/README.md b/src/cli/custom-template/README.md
index f1026523..450e18d9 100644
--- a/src/cli/custom-template/README.md
+++ b/src/cli/custom-template/README.md
@@ -6,24 +6,20 @@ Custom template for the [scaffolding tool](https://github.com/holochain/scaffold
 
 1. To scaffold a new project with this template, run this:
 
-`nix run github:<TODO:REPLACE_ME_WITH_THE_APPROPRIATE_GIT_URL>#hc-scaffold-custom-template -- web-app`
+`nix run github:<TODO:REPLACE_ME_WITH_CUSTOM_TEMPLATE_GIT_URL>#app -- web-app`
 
-2. If you already have an existing project, add the `<TODO:REPLACE_ME_WITH_THE_APPROPRIATE_GIT_URL>` repository as input to your flake, and use it in the packages or your `devShell`:
+2. If you already have an existing project, add the `<TODO:REPLACE_ME_WITH_CUSTOM_TEMPLATE_GIT_URL>` repository as input to your flake, and use it in the packages or your `devShell`:
 
 ```diff
 {
-  description = "Template for Holochain app development";
+  description = "Flake for Holochain app development";
 
   inputs = {
-    versions.url  = "github:holochain/holochain?dir=versions/weekly";
+    holonix.url = "github:holochain/holonix?ref=main";
+    nixpkgs.follows = "holonix/nixpkgs";
+    flake-parts.follows = "holonix/flake-parts";
 
-    holochain-flake.url = "github:holochain/holochain";
-    holochain-flake.inputs.versions.follows = "versions";
-
-    nixpkgs.follows = "holochain-flake/nixpkgs";
-    flake-parts.follows = "holochain-flake/flake-parts";
-
-+   scaffolding.url = "github:<TODO:REPLACE_ME_WITH_THE_APPROPRIATE_GIT_URL>";
++   scaffolding.url = "github:<TODO:REPLACE_ME_WITH_CUSTOM_TEMPLATE_GIT_URL>";
   };
 
   outputs = inputs:
@@ -32,7 +28,7 @@ Custom template for the [scaffolding tool](https://github.com/holochain/scaffold
         inherit inputs;
       }
       {
-        systems = builtins.attrNames inputs.holochain-flake.devShells;
+        systems = builtins.attrNames inputs.holonix.devShells;
         perSystem =
           { inputs'
           , config
@@ -41,17 +37,17 @@ Custom template for the [scaffolding tool](https://github.com/holochain/scaffold
           , ...
           }: {
             devShells.default = pkgs.mkShell {
-              inputsFrom = [ inputs'.holochain-flake.devShells.holonix ];
+              inputsFrom = [ inputs'.holonix.devShells.default ];
               packages = [
                 pkgs.nodejs_20
                 # more packages go here
 +             ] ++ [
-+                inputs'.scaffolding.packages.hc-scaffold-custom-template
++                inputs'.scaffolding.packages.app
               ];
             };
           };
       };
-}  
+}
 ```
 
 ---
@@ -72,4 +68,4 @@ To run the tests for this custom template, simply run the `run_test.sh` script:
 
 ```bash
 sh run_test.sh
-``` 
+```
diff --git a/src/lib.rs b/src/lib.rs
index a4cd6e8a..5ef6a0a7 100644
--- a/src/lib.rs
+++ b/src/lib.rs
@@ -97,10 +97,19 @@
 //! To create a custom template, execute these steps:
 //!
 //! 1. Run this command:
-//!     `nix flake init -t github:holochain/scaffolding`
-//! 2. A new dir `custom-template` will be created in the current directory. Check this new folder in a version control system like git.
-//! 3. Replace all instances of `<TODO:REPLACE_ME_WITH_THE_APPROPRIATE_GIT_URL>` in its `README.md` file with the appropriate git URL (eg. "github:holochain-open-dev/templates").
-//! 4. Replace all instances of `<TODO:REPLACE_ME_WITH_THE_APPROPRIATE_GIT_URL>` in its `template/web-app/flake.nix.hbs` file with the appropriate git URL (eg. "github:holochain-open-dev/templates").
+//!     - Through holonix:
+//!
+//!     ```bash
+//!     nix run github:holochain/holonix#hc-scaffold -- template new
+//!     ```
+//!     - Outside holonix if the cli was installed via `cargo install holochain_scaffolding_cli`
+//!
+//!     ```bash
+//!     hc-scaffold template new
+//!     ```
+//! 2. A new dir will be created in the current directory. Check this new folder in a version control system like git.
+//! 3. Replace all instances of `<TODO:REPLACE_ME_WITH_CUSTOM_TEMPLATE_GIT_URL>` in its `README.md` file with the appropriate git URL (eg. "github:holochain-open-dev/templates").
+//! 4. Replace all instances of `<TODO:REPLACE_ME_WITH_CUSTOM_TEMPLATE_GIT_URL>` in its `template/web-app/flake.nix.hbs` file with the appropriate git URL (eg. "github:holochain-open-dev/templates").
 //!
 //! That's it! At this point you will have a correctly functioning custom template repository with tests, a `README.md` documenting how to use it, and a `template` folder. That's where your custom template lives.
 //!