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Investigate on app behavior for unknown lookups and implement desired behavior #620

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tamslo opened this issue Jun 29, 2023 · 0 comments
Closed
5 tasks done
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P: App Project: App Study: Must have T: Docs Type: Documentation Updates

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@tamslo
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tamslo commented Jun 29, 2023

Lookups are fetched from CPIC and matched with users' diplotypes from the lab. If users have no results or unknown results for drug guidelines, these should be mapped to Indeterminate.

Tasks

  • Define desired and investigate current app behavior (see wiki)
  • Discuss with Aniwaa
  • Refine app behavior definition
  • Add collected tasks to pre-processing script issue (Create validation script for lab data #657)
  • Create other emerging issues (how to show in app)

App behavior

See wiki page

What should be caught by the pre-processing script:

  • Unknown gene – make clear that guidelines cannot be shown; drug guideline will be Indeterminate, independent if present in Anni (? – should test; should not happen)
  • Unknown diplotype but known gene – make clear that gene and diplotype will be shown in list but all drug guidelines will be Indeterminate (? – should test; can happen but should double-check those cases)
@tamslo tamslo added P: App Project: App T: Feature Type: New Features Study: Must have labels Jun 29, 2023
@tamslo tamslo changed the title Map genotypes not recognized by CPIC to Indeterminate Map genotypes not recognized by lookups to Indeterminate Aug 7, 2023
@tamslo tamslo changed the title Map genotypes not recognized by lookups to Indeterminate Investigate on app behavior for unknown lookups and implement desired behavior Aug 25, 2023
tamslo added a commit that referenced this issue Sep 22, 2023
@tamslo tamslo added T: Docs Type: Documentation Updates and removed T: Feature Type: New Features labels Sep 26, 2023
@tamslo tamslo closed this as completed Sep 26, 2023
@tamslo tamslo reopened this Sep 26, 2023
tamslo added a commit that referenced this issue Sep 26, 2023
tamslo added a commit that referenced this issue Sep 26, 2023
tamslo added a commit that referenced this issue Sep 27, 2023
@tamslo tamslo closed this as completed Sep 27, 2023
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Labels
P: App Project: App Study: Must have T: Docs Type: Documentation Updates
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