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This file describes ideas how the labbook works and which commands are available. At the center of the labbook commands is a configuration file defining pipelines and dependencies

Creation

  • labbook init project <template>

    Create a new project from template. Comparable to git init with some extras like adding:

    1. a .gitignore file;
    2. a .labbook.json file;
    3. a results folder for archived results.
  • labbook init campaign <name>

    Creates a new campaign folder with specified name and sets metadata, if folder exists subfolders are added to version control

    base name results .gitignore .archive .config

- =labbook init campaign parameter_foo

base parameter_foo results .gitignore .archive .config

  • labbook init new_base [parameter_foo/1] -m "Use parameter 1 for new base case"

    base results .archive/old_base_id

Execution

  • labook execute <pipeline> <campaign/case>

    Execute the pipeline for a full campaign or a specific case. There are four different pipeline types:

    1. preprocessing:

      Brings a campaign or a case into an executable state.

    2. execution:

      Runs a simulation and sets the state to started. If copy flag is set the case is copied to a dedicated folder with the hash of the transforming function, otherwise only a simlink is created.

    3. postprocessing

      Extracts results from the cases and sets the state to complete. Initially, results are non-final, meaning they are added to the repo but flaged as non-final. Non final results can be purged easily or finallised and archived.

    4. archive

    A pipeline might be of multiple types

  • labook rebase <campaign/case>

    Sets campaign/case as new base case, archives all other cases

Log

  • labbook checkout <revision>

    Go back to revision

  • labbook log

    Shows a full log of the current project

  • labbook log [done/started/waiting]

    Shows cases which are completed/started/waiting

  • labbook commit -m <message>

    Commit state to version control. TODO Specify when it needed

    base results .gitignore .archive .config