From c800a85fd005add02586a6bd6c4b81aaa6f81c71 Mon Sep 17 00:00:00 2001 From: huizezhang-sherry Date: Tue, 9 Jul 2024 17:25:27 +0000 Subject: [PATCH] Built site for cubble@0.3.2: 57bdb92 --- 404.html | 14 +-- LICENSE-text.html | 14 +-- LICENSE.html | 14 +-- articles/cb1class.html | 41 +++---- articles/cb2create.html | 42 ++++---- articles/cb3tsibblesf.html | 49 ++++----- articles/cb4glyph.html | 22 ++-- articles/cb5match.html | 36 +++---- articles/cb6interactive.html | 22 ++-- articles/cb7misc.html | 22 ++-- articles/index.html | 14 +-- authors.html | 20 ++-- index.html | 14 +-- news/index.html | 16 +-- pkgdown.yml | 5 +- reference/accessors.html | 56 +++++----- reference/as_cubble.html | 56 +++++----- reference/attr.html | 30 +++--- reference/check-class.html | 24 ++--- reference/check_key.html | 28 ++--- reference/climate-data.html | 18 ++-- reference/covid.html | 18 ++-- reference/cubble-class.html | 40 +++---- reference/cubble-package.html | 16 +-- reference/cubble-print.html | 30 +++--- reference/dplyr.html | 86 +++++++-------- reference/face.html | 34 +++--- reference/glyph.html | 46 ++++---- reference/index.html | 16 +-- reference/make_spatial_sf.html | 26 ++--- reference/make_temporal_tsibble.html | 20 ++-- reference/matching.html | 50 ++++----- reference/netcdf.html | 26 ++--- reference/reexports.html | 16 +-- reference/river.html | 16 +-- reference/test-data.html | 16 +-- reference/tsibble.html | 34 +++--- reference/unfold.html | 30 +++--- reference/update.html | 22 ++-- sitemap.xml | 155 +++++++-------------------- 40 files changed, 577 insertions(+), 677 deletions(-) diff --git a/404.html b/404.html index 4fb6e488..3a6e5a65 100644 --- a/404.html +++ b/404.html @@ -25,7 +25,7 @@ - +
- +
@@ -125,16 +125,16 @@

Page not found (404)

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/LICENSE-text.html b/LICENSE-text.html index 5f185c8e..bcb7e44d 100644 --- a/LICENSE-text.html +++ b/LICENSE-text.html @@ -3,7 +3,7 @@ - +
- +
@@ -93,15 +93,15 @@

License

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/LICENSE.html b/LICENSE.html index 5adf2e3a..3fd8e572 100644 --- a/LICENSE.html +++ b/LICENSE.html @@ -3,7 +3,7 @@ - +
- +
@@ -97,15 +97,15 @@

MIT License

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/cb1class.html b/articles/cb1class.html index 9b9ba3fa..6f6d6e32 100644 --- a/articles/cb1class.html +++ b/articles/cb1class.html @@ -18,15 +18,13 @@ - - - +
- +
-
-class(cb_nested)
+#> 3 ASN00086282  145. -37.7 113.  melbourne airport  94866 <tibble [10 × 4]>
+class(cb_nested)
 #> [1] "spatial_cubble_df" "cubble_df"         "tbl_df"           
 #> [4] "tbl"               "data.frame"

This toy dataset is a subset of a larger data @@ -154,7 +151,7 @@

The cubble object
+
-
-class(cb_long)
+#> # ℹ 20 more rows
+class(cb_long)
 #> [1] "temporal_cubble_df" "cubble_df"          "tbl_df"            
 #> [4] "tbl"                "data.frame"

The cubble header now shows the recorded temporal period (2020-01-01 @@ -217,7 +213,7 @@

The cubble attributests column. Below we print the attributes information for the previously shown cb_nested and cb_long objects:

-
+
 attributes(cb_nested)
 #> $class
 #> [1] "spatial_cubble_df" "cubble_df"         "tbl_df"           
@@ -241,9 +237,8 @@ 

The cubble attributes#> [1] "date" #> #> $coords -#> [1] "long" "lat"

-
-attributes(cb_long)
+#> [1] "long" "lat"
+attributes(cb_long)
 #> $class
 #> [1] "temporal_cubble_df" "cubble_df"          "tbl_df"            
 #> [4] "tbl"                "data.frame"        
@@ -306,9 +301,7 @@ 

The cubble attributes - -

+

@@ -321,16 +314,16 @@

The cubble attributes

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/cb2create.html b/articles/cb2create.html index 4298f2ff..5ca986a5 100644 --- a/articles/cb2create.html +++ b/articles/cb2create.html @@ -18,15 +18,13 @@ - - - +
- +
@@ -106,7 +104,7 @@

2. Creation and coercion

- Source: vignettes/cb2create.Rmd + Source: vignettes/cb2create.Rmd
@@ -165,13 +163,11 @@

Create from separate s #> <chr> <dbl> <chr> <dbl> <dbl> <dbl> <POINT [°]> <list> #> 1 ASN00086038 78.4 essen… 95866 145. -37.7 (144.9066 -37.7276) <tbl_ts> #> 2 ASN00086077 12.1 moora… 94870 145. -38.0 (145.0964 -37.98) <tbl_ts> -#> 3 ASN00086282 113. melbo… 94866 145. -37.7 (144.8321 -37.6655) <tbl_ts>

-
-class(res)
+#> 3 ASN00086282 113.  melbo…  94866  145. -37.7 (144.8321 -37.6655) <tbl_ts>
+class(res)
 #> [1] "spatial_cubble_df" "cubble_df"         "sf"               
-#> [4] "tbl_df"            "tbl"               "data.frame"
-
-class(res$ts[[1]])
+#> [4] "tbl_df"            "tbl"               "data.frame"
+class(res$ts[[1]])
 #> [1] "tbl_ts"     "tbl_df"     "tbl"        "data.frame"

The vignette 3. Compatibility with tsibble and sf will introduce more on the cubble’s compatibility @@ -186,7 +182,7 @@

The tibble objectsThe dataset climate_flat combines the spatial data, stations, with the temporal data, meteo, into a single tibble object. It can be coerced into a cubble using:

-
+
 climate_flat |> as_cubble(key = id, index = date, coords = c(long, lat))
 #> # cubble:   key: id [3], index: date, nested form
 #> # spatial:  [144.83, -37.98, 145.1, -37.67], Missing CRS!
@@ -204,7 +200,7 @@ 

The NetCDF datancdf4, RNetCDF, and tidync. The code below converts a NetCDF object of class ncdf4 into a cubble object:

-
+
 path <- system.file("ncdf/era5-pressure.nc", package = "cubble")
 raw <- ncdf4::nc_open(path)
 as_cubble(raw)
@@ -228,14 +224,14 @@ 

The NetCDF datavars, long_range and lat_range arguments can be used to subset the data based on the variable and the grid resolution:

-
+
 as_cubble(raw, vars = "q",
           long_range = seq(-180, 180, 1), lat_range = seq(-90, 90, 1))

The stars objects

-
+
 tif <- system.file("tif/L7_ETMs.tif", package = "stars")
 x <- stars::read_stars(tif)
 as_cubble(x, index = band)
@@ -263,7 +259,7 @@ 

The stars objects

The sftime objects

-
+
 dt <- climate_flat |> 
   sf::st_as_sf(coords = c("long", "lat"), crs = sf::st_crs("OGC:CRS84")) |> 
   sftime::st_as_sftime()
@@ -282,9 +278,7 @@ 

The sftime objects - -

+

@@ -297,16 +291,16 @@

The sftime objects

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/cb3tsibblesf.html b/articles/cb3tsibblesf.html index a0a446a9..7e9df40e 100644 --- a/articles/cb3tsibblesf.html +++ b/articles/cb3tsibblesf.html @@ -18,15 +18,13 @@ - - - +
- +
@@ -106,7 +104,7 @@

3. Compatibility with tsibble and sf

- Source: vignettes/cb3tsibblesf.Rmd + Source: vignettes/cb3tsibblesf.Rmd
@@ -151,9 +149,8 @@

Using a tsibble for the temp #> 8 ASN00086038 2020-01-08 0 26.4 16.4 #> 9 ASN00086038 2020-01-09 0 33.1 17.4 #> 10 ASN00086038 2020-01-10 0 34 19.6 -#> # ℹ 20 more rows

-
-class(ts_long)
+#> # ℹ 20 more rows
+class(ts_long)
 #> [1] "temporal_cubble_df" "cubble_df"          "tbl_ts"            
 #> [4] "tbl_df"             "tbl"                "data.frame"

The long cubble shows [tsibble] in the header to @@ -161,7 +158,7 @@

Using a tsibble for the temp applies to the tbl_ts class can also be applied to the temporal cubble objects, for example, checking whether the data contain temporal gaps:

-
+
 ts_long |> has_gaps()
 #> # A tibble: 3 × 2
 #>   id          .gaps
@@ -174,7 +171,7 @@ 

Using a tsibble for the temp promoted cubble object (ts_long2) will be the same as the one created with a tsibble component initially (ts_long):

-
+
 ts_long2 <- make_cubble(
   stations, meteo, 
   key = id, index = date, coords = c(long, lat)) |> 
@@ -193,7 +190,7 @@ 

A spatial component with sf
+
-
-class(sf_nested)
+#> 3 ASN00086282 113.  melbo…  94866  145. -37.7 (144.8321 -37.6655) <tibble>
+class(sf_nested)
 #> [1] "spatial_cubble_df" "cubble_df"         "sf"               
 #> [4] "tbl_df"            "tbl"               "data.frame"

The following code shows how to perform coordinate transformation with st_transform on a cubble object:

-
+
 sf_nested |> sf::st_transform(crs = "EPSG:3857")
-#> Warning: st_crs<- : replacing crs does not reproject data; use st_transform for
-#> that
 #> # cubble:   key: id [3], index: date, nested form, [sf]
-#> # spatial:  [16122635.62, -4576600.87, 16152057.36, -4532279.36], WGS 84
+#> # spatial:  [16122635.62, -4576600.87, 16152057.36, -4532279.36], WGS 84 /
+#> #   Pseudo-Mercator
 #> # temporal: date [date], prcp [dbl], tmax [dbl], tmin [dbl]
 #>   id           elev name   wmo_id  long   lat            geometry ts      
-#>   <chr>       <dbl> <chr>   <dbl> <dbl> <dbl>         <POINT [°]> <list>  
+#>   <chr>       <dbl> <chr>   <dbl> <dbl> <dbl>         <POINT [m]> <list>  
 #> 1 ASN00086038  78.4 essen…  95866  145. -37.7 (16130929 -4541016) <tibble>
 #> 2 ASN00086077  12.1 moora…  94870  145. -38.0 (16152057 -4576601) <tibble>
 #> 3 ASN00086282 113.  melbo…  94866  145. -37.7 (16122636 -4532279) <tibble>

The counterpart to promote the spatial component in an existing cubble to be an sf object is make_spatial_sf():

-
+
 (sf_nested2 <- make_cubble(
   stations, meteo, 
   key = id, index = date, coords = c(long, lat)) |> 
@@ -261,9 +256,7 @@ 

Reference - -

+
@@ -276,16 +269,16 @@

Reference

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/cb4glyph.html b/articles/cb4glyph.html index bd188e7d..ad28e9d0 100644 --- a/articles/cb4glyph.html +++ b/articles/cb4glyph.html @@ -18,15 +18,13 @@ - - - +
- +
@@ -106,7 +104,7 @@

4. Making a glyph map

- Source: vignettes/cb4glyph.Rmd + Source: vignettes/cb4glyph.Rmd
@@ -280,9 +278,7 @@

Reference - -

+

@@ -295,16 +291,16 @@

Reference

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/cb5match.html b/articles/cb5match.html index 337c31f9..5d21568a 100644 --- a/articles/cb5match.html +++ b/articles/cb5match.html @@ -18,15 +18,13 @@ - - - +
- +
@@ -106,7 +104,7 @@

5. Matching different data sources

- Source: vignettes/cb5match.Rmd + Source: vignettes/cb5match.Rmd
@@ -195,9 +193,8 @@

Spatial matching
 res_sp <- match_spatial(climate_vic, river, spatial_n_group = 10, return_cubble = TRUE)
 str(res_sp, max.level = 0)
-#> List of 10

-
-res_sp[[1]]
+#> List of 10
+res_sp[[1]]
 #> # cubble:   key: id [2], index: date, nested form, [sf]
 #> # spatial:  [144.52, -37.02, 144.54, -37.02], WGS 84
 #> # temporal: date [date], prcp [dbl], tmax [dbl], tmin [dbl]
@@ -205,9 +202,8 @@ 

Spatial matching#> <chr> <dbl> <dbl> <dbl> <chr> <dbl> <list> <chr> <POINT [°]> #> 1 ASN00… 145. -37.0 290 rede… 94859 <tibble> clim… (144.5203 -37.0194) #> 2 406213 145. -37.0 NA CAMP… NA <tibble> river (144.5403 -37.01512) -#> # ℹ 2 more variables: group <int>, dist [m]

-
-(res_sp <- res_sp[-c(5, 8)] |> bind_rows())
+#> # ℹ 2 more variables: group <int>, dist [m]
+(res_sp <- res_sp[-c(5, 8)] |> bind_rows())
 #> # cubble:   key: id [16], index: date, nested form, [sf]
 #> # spatial:  [144.52, -38.14, 148.47, -36.13], WGS 84
 #> # temporal: date [date], prcp [dbl], tmax [dbl], tmin [dbl]
@@ -238,7 +234,7 @@ 

Temporal matching
+
 (res_tm <- res_sp |> 
   match_temporal(
     data_id = type, match_id = group,
@@ -257,7 +253,7 @@ 

Temporal matching
+
 res_tm <- res_sp |> 
   match_temporal(
     data_id = type, match_id = group,
@@ -285,9 +281,7 @@ 

Temporal matching - -

+

@@ -300,16 +294,16 @@

Temporal matching

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/cb6interactive.html b/articles/cb6interactive.html index 157a0790..4dba6289 100644 --- a/articles/cb6interactive.html +++ b/articles/cb6interactive.html @@ -18,15 +18,13 @@ - - - +
- +
@@ -106,7 +104,7 @@

6. Interactive graphics

- Source: vignettes/cb6interactive.Rmd + Source: vignettes/cb6interactive.Rmd
@@ -276,9 +274,7 @@

Making selection to see the linking +

@@ -291,16 +287,16 @@

Making selection to see the linking

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/cb7misc.html b/articles/cb7misc.html index ac1e6987..08e7663d 100644 --- a/articles/cb7misc.html +++ b/articles/cb7misc.html @@ -18,15 +18,13 @@ - - - +
- +
@@ -107,7 +105,7 @@

7. Answers to common questions and extra examples

- Source: vignettes/cb7misc.Rmd + Source: vignettes/cb7misc.Rmd
@@ -154,9 +152,7 @@

Why +

@@ -169,16 +165,16 @@

Why

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/articles/index.html b/articles/index.html index 20f22047..4d8265d3 100644 --- a/articles/index.html +++ b/articles/index.html @@ -3,7 +3,7 @@ - +
- +
@@ -102,15 +102,15 @@

All vignettes

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/authors.html b/authors.html index fee3877b..e3bcd293 100644 --- a/authors.html +++ b/authors.html @@ -3,7 +3,7 @@ - +
- +
@@ -75,7 +75,7 @@

Authors and Citation

- +
  • H. Sherry Zhang. Author, maintainer.

    @@ -100,14 +100,14 @@

    Authors and Citation

    Citation

    - Source: DESCRIPTION + Source: DESCRIPTION

    Zhang H, Cook D, Laa U, Langrené N, Menéndez P (2024). cubble: A Vector Spatio-Temporal Data Structure for Data Analysis. -R package version 0.3.2, https://huizezhang-sherry.github.io/cubble/, https://github.com/huizezhang-sherry/cubble. +R package version 0.3.2, https://huizezhang-sherry.github.io/cubble/, https://github.com/huizezhang-sherry/cubble.

    @Manual{,
       title = {cubble: A Vector Spatio-Temporal Data Structure for Data Analysis},
    @@ -128,15 +128,15 @@ 

    Citation

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/index.html b/index.html index 5193a53c..3b2b8b01 100644 --- a/index.html +++ b/index.html @@ -26,7 +26,7 @@ - +
- +
@@ -225,16 +225,16 @@

Dev status

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/news/index.html b/news/index.html index e4dddb7a..f80ce69f 100644 --- a/news/index.html +++ b/news/index.html @@ -3,7 +3,7 @@ - +
- +
@@ -127,15 +127,15 @@
- - + + diff --git a/pkgdown.yml b/pkgdown.yml index 06e951f8..8dcac9d5 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -1,5 +1,5 @@ pandoc: 3.1.11 -pkgdown: 2.0.9 +pkgdown: 2.1.0 pkgdown_sha: ~ articles: cb1class: cb1class.html @@ -9,5 +9,4 @@ articles: cb5match: cb5match.html cb6interactive: cb6interactive.html cb7misc: cb7misc.html -last_built: 2024-07-07T16:39Z - +last_built: 2024-07-09T17:24Z diff --git a/reference/accessors.html b/reference/accessors.html index 5d4b684e..9065a8aa 100644 --- a/reference/accessors.html +++ b/reference/accessors.html @@ -3,7 +3,7 @@ - +
- +
@@ -81,44 +81,46 @@

Accessors to a cubble object

-
# S3 method for spatial_cubble_df
-[(data, i, j, drop = FALSE)
-
-# S3 method for temporal_cubble_df
-[(data, i, j, drop = FALSE)
-
-# S3 method for spatial_cubble_df
-names(x) <- value
-
-# S3 method for temporal_cubble_df
-names(x) <- value
-
-# S3 method for cubble_df
-[[(x, i) <- value
+
# S3 method for class 'spatial_cubble_df'
+data[i, j, drop = FALSE]
+
+# S3 method for class 'temporal_cubble_df'
+data[i, j, drop = FALSE]
+
+# S3 method for class 'spatial_cubble_df'
+names(x) <- value
+
+# S3 method for class 'temporal_cubble_df'
+names(x) <- value
+
+# S3 method for class 'cubble_df'
+x[[i]] <- value

Arguments

-
data
+ + +
data

an object of class spatial_cubble_df or temporal_cubble_df

-
i, j
+
i, j

row and column selector

-
drop
+
drop

logical. If TRUE the result is coerced to the lowest possible dimension. The default is to drop if only one column is left, but not to drop if only one row is left.

-
x
+
x

data frame.

-
value
+
value

A suitable replacement value: it will be repeated a whole number of times if necessary and it may be coerced: see the Coercion section. If NULL, deletes the column if a single @@ -238,15 +240,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/as_cubble.html b/reference/as_cubble.html index cd4bf15a..9a4fb7cb 100644 --- a/reference/as_cubble.html +++ b/reference/as_cubble.html @@ -3,7 +3,7 @@ - +
- +
@@ -83,16 +83,16 @@

Coerce foreign objects into a cubble object

as_cubble(data, key, index, coords, ...)
 
-# S3 method for data.frame
+# S3 method for class 'data.frame'
 as_cubble(data, key, index, coords, ...)
 
-# S3 method for tbl_df
+# S3 method for class 'tbl_df'
 as_cubble(data, key, index, coords, crs, dimensions, ...)
 
-# S3 method for sf
+# S3 method for class 'sf'
 as_cubble(data, key, index, ...)
 
-# S3 method for ncdf4
+# S3 method for class 'ncdf4'
 as_cubble(
   data,
   key,
@@ -104,64 +104,64 @@ 

Coerce foreign objects into a cubble object

... ) -# S3 method for stars +# S3 method for class 'stars' as_cubble(data, key, index, coords, ...) -# S3 method for sftime +# S3 method for class 'sftime' as_cubble(data, key, index, coords, ...)

Arguments

-
data
+ + +
data

an object to be converted into an cubble object. Currently support objects of classes tibble, ncdf4, stars, and sftime.

-
key
+
key

a character (symbol), the spatial identifier, see make_cubble()

-
index
+
index

a character (symbol), the temporal identifier, see make_cubble().

-
coords
+
coords

a vector of character (symbol) of length 2, see make_cubble().

-
...
+
...

other arguments.

-
crs
+
crs

used in as_cubble.tbl_df() to set the crs. the data to read in as_cubble.netcdf().

-
dimensions
+
dimensions

used when creating a cubble from a stars object

-
vars
+
vars

a vector of variables to read in (with quote), used in as_cubble.netcdf() to select the variable to read in.

-
lat_range, long_range
+
lat_range, long_range

in the syntax of seq(FROM, TO, BY) to downsample

Value

- - -

a cubble object

+

a cubble object

@@ -199,12 +199,12 @@

Examples

long_range = seq(113, 153, 3), lat_range = seq(-53, -12, 3)) -if (FALSE) { +if (FALSE) { # \dontrun{ # stars - take a few seconds to run tif <- system.file("tif/L7_ETMs.tif", package = "stars") x <- stars::read_stars(tif) x |> as_cubble(index = band) -} +} # } # don't have to supply coords if create from a sftime dt <- climate_flat |> @@ -233,15 +233,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/attr.html b/reference/attr.html index 12fb11ae..e256e17d 100644 --- a/reference/attr.html +++ b/reference/attr.html @@ -3,7 +3,7 @@ - +
- +
@@ -81,23 +81,23 @@

Extract cubble attributes

-
# S3 method for cubble_df
+    
# S3 method for class 'cubble_df'
 key_vars(x)
 
-# S3 method for cubble_df
+# S3 method for class 'cubble_df'
 key(x)
 
-# S3 method for cubble_df
+# S3 method for class 'cubble_df'
 key_data(.data)
 
 coords(data)
 
 spatial(data)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 spatial(data)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 spatial(data)
 
 index(data)
@@ -107,7 +107,9 @@ 

Extract cubble attributes

Arguments

-
x, .data, data
+ + +
x, .data, data

a cubble object

@@ -163,15 +165,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/check-class.html b/reference/check-class.html index 04cacbcb..d08f055f 100644 --- a/reference/check-class.html +++ b/reference/check-class.html @@ -3,7 +3,7 @@ - +
- +
@@ -94,15 +94,15 @@

Predicate functions on the object class

Arguments

-
data
+ + +
data

an object to test for the class

Value

- - -

a logical value of TRUE/FALSE

+

a logical value of TRUE/FALSE

@@ -135,15 +135,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/check_key.html b/reference/check_key.html index 00413df2..02686ea3 100644 --- a/reference/check_key.html +++ b/reference/check_key.html @@ -7,7 +7,7 @@ - +
- +
@@ -94,18 +94,20 @@

Check on key when create cubble from two components (spatial/temporal)

Arguments

-
spatial
+ + +
spatial

a tibble object or an sf object, the spatial component containing the key and coords variable (coords can be automatically created from an sf object if not supplied).

-
temporal
+
temporal

a tibble object or a tsibble object, the temporal component containing the key and index variable.

-
by
+
by

in the syntax of the by argument in dplyr::left_join(), used in make_cubble() when the key variable has different names in the spatial and temporal data.

@@ -113,9 +115,7 @@

Arguments

Value

- - -

a list with three elements: 1) paired: a tibble of paired ID from +

a list with three elements: 1) paired: a tibble of paired ID from spatial and temporal data, 2) potential_pairs: a tibble of pairs that could potentially match from both datasets, 3) others: other key values that can't be matched in a list: others$temporal and others$spatial

@@ -225,15 +225,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/climate-data.html b/reference/climate-data.html index 12c39237..661a4704 100644 --- a/reference/climate-data.html +++ b/reference/climate-data.html @@ -7,7 +7,7 @@ - +
- +
@@ -101,7 +101,7 @@

Format

Details

- +
id

station ID, "ASN000" are international paddings, the next two digits (digit 8-9) indicates the states the station is in: @@ -165,15 +165,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/covid.html b/reference/covid.html index ff5e5f23..2b60e6f1 100644 --- a/reference/covid.html +++ b/reference/covid.html @@ -6,7 +6,7 @@ - +
- +
@@ -99,7 +99,7 @@

Format

Details

- +
date

date object, from 2022-01-01 to 2020-03-23

@@ -204,15 +204,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/cubble-class.html b/reference/cubble-class.html index ff00baae..79864656 100644 --- a/reference/cubble-class.html +++ b/reference/cubble-class.html @@ -3,7 +3,7 @@ - +
- +
@@ -97,17 +97,19 @@

Create a cubble object

Arguments

-
...
+ + +
...

a set of name-value pairs to create a cubble, need to include the key, index, and coords variables.

-
key
+
key

a character (or symbol), the spatial identifier. See the Key section in tsibble::as_tsibble()

-
index
+
index

a character (or symbol), the temporal identifier. Currently support base R classes Date, POSIXlt, POSIXct and tsibble's tsibble::yearmonth(), tsibble::yearweek(), @@ -115,31 +117,31 @@

Arguments

tsibble::as_tsibble()

-
coords
+
coords

a vector of character (or symbol) of length two, in the order of longitude first and then latitude, the argument can be omitted if created from an sf and its subclasses. In case the sf geometry column is not POINT, coords will be the centroid coordinates.

-
spatial
+
spatial

a tibble object or an sf object, the spatial component containing the key and coords variable (coords can be automatically created from an sf object if not supplied).

-
temporal
+
temporal

a tibble object or a tsibble object, the temporal component containing the key and index variable.

-
by
+
by

in the syntax of the by argument in dplyr::left_join(), used in make_cubble() when the key variable has different names in the spatial and temporal data.

-
potential_match
+
potential_match

a key_tbl object from check_key(). When unmatched key values appear in spatial and temporal data, make_cubble will prompt the user to use check_key() for @@ -148,7 +150,7 @@

Arguments

check.

-
key_use
+
key_use

a character of either "spatial" or "temporal". When potential_math is activated, this argument specifies which key column in the potential match to use. Default to "temporal".

@@ -156,9 +158,7 @@

Arguments

Value

- - -

a cubble object

+

a cubble object

@@ -206,15 +206,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/cubble-package.html b/reference/cubble-package.html index 92560cab..48a0e15c 100644 --- a/reference/cubble-package.html +++ b/reference/cubble-package.html @@ -4,7 +4,7 @@ - +
- +
@@ -111,15 +111,15 @@

Author

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/cubble-print.html b/reference/cubble-print.html index a33a9fed..3f497c38 100644 --- a/reference/cubble-print.html +++ b/reference/cubble-print.html @@ -3,7 +3,7 @@ - +
- +
@@ -81,30 +81,32 @@

Print methods

-
# S3 method for cubble_df
+    
# S3 method for class 'cubble_df'
 print(x, width = NULL, ...)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 tbl_sum(x)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 tbl_sum(x)

Arguments

-
x
+ + +
x

any R object (conceptually); typically numeric.

-
width
+
width

default method: the minimum field width or NULL or 0 for no restriction.

AsIs method: the maximum field width for non-character objects. NULL corresponds to the default 12.

-
...
+
...

further arguments passed to or from other methods.

@@ -151,15 +153,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/dplyr.html b/reference/dplyr.html index 3babd99c..43faf615 100644 --- a/reference/dplyr.html +++ b/reference/dplyr.html @@ -8,7 +8,7 @@ - +
- +
@@ -91,37 +91,37 @@

dplyr methods

-
# S3 method for temporal_cubble_df
+    
# S3 method for class 'temporal_cubble_df'
 arrange(.data, ...)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 select(.data, ...)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 select(.data, ...)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 group_by(.data, ..., .add, .drop)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 group_by(.data, ..., .add, .drop)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 ungroup(x, ...)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 ungroup(x, ...)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 summarise(.data, ..., .by = NULL, .groups = NULL)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 summarise(.data, ..., .by = key_vars(.data), .groups = NULL)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 rename(.data, ...)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 rename(.data, ...)
 
 bind_rows.temporal_cubble_df(..., .id = NULL)
@@ -130,43 +130,45 @@ 

dplyr methods

bind_cols.temporal_cubble_df(..., .name_repair) -# S3 method for spatial_cubble_df +# S3 method for class 'spatial_cubble_df' rowwise(data, ...) -# S3 method for temporal_cubble_df +# S3 method for class 'temporal_cubble_df' rowwise(data, ...) -# S3 method for cubble_df +# S3 method for class 'cubble_df' dplyr_col_modify(data, cols) -# S3 method for spatial_cubble_df +# S3 method for class 'spatial_cubble_df' dplyr_row_slice(data, i, ...) -# S3 method for temporal_cubble_df +# S3 method for class 'temporal_cubble_df' dplyr_row_slice(data, i, ...) -# S3 method for spatial_cubble_df +# S3 method for class 'spatial_cubble_df' dplyr_reconstruct(data, template) -# S3 method for temporal_cubble_df +# S3 method for class 'temporal_cubble_df' dplyr_reconstruct(data, template) -# S3 method for spatial_cubble_df +# S3 method for class 'spatial_cubble_df' mutate(.data, ...) -# S3 method for temporal_cubble_df +# S3 method for class 'temporal_cubble_df' mutate(.data, ...) -# S3 method for spatial_cubble_df +# S3 method for class 'spatial_cubble_df' filter(.data, ...) -# S3 method for spatial_cubble_df +# S3 method for class 'spatial_cubble_df' arrange(.data, ...)

Arguments

-
...
+ + +
...

In group_by(), variables or computations to group by. Computations are always done on the ungrouped data frame. To perform computations on the grouped data, you need to use @@ -175,7 +177,7 @@

Arguments

In ungroup(), variables to remove from the grouping.

-
.add
+
.add

When FALSE, the default, group_by() will override existing groups. To add to the existing groups, use .add = TRUE.

@@ -184,24 +186,24 @@

Arguments

our naming conventions.

-
.drop
+
.drop

Drop groups formed by factor levels that don't appear in the data? The default is TRUE except when .data has been previously grouped with .drop = FALSE. See group_by_drop_default() for details.

-
x
+
x

A tbl()

-
.by
+
.by

[Experimental]

<tidy-select> Optionally, a selection of columns to group by for just this operation, functioning as an alternative to group_by(). For details and examples, see ?dplyr_by.

-
.groups
+
.groups

[Experimental] Grouping structure of the result.

  • "drop_last": dropping the last level of grouping. This was the only supported option before version 1.0.0.

  • @@ -218,33 +220,33 @@

    Arguments

    or when summarise() is called from a function in a package.

-
.id
+
.id

The name of an optional identifier column. Provide a string to create an output column that identifies each input. The column will use names if available, otherwise it will use positions.

-
.name_repair
+
.name_repair

One of "unique", "universal", or "check_unique". See vctrs::vec_as_names() for the meaning of these options.

-
data, .data
+
data, .data

a cubble object of class spatial_cubble_df or temporal_cubble_df

-
cols
+
cols

A named list used to modify columns. A NULL value should remove an existing column.

-
i
+
i

A numeric or logical vector that indexes the rows of data.

-
template
+
template

Template data frame to use for restoring attributes.

@@ -755,15 +757,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/face.html b/reference/face.html index f8999e87..a94d9cd6 100644 --- a/reference/face.html +++ b/reference/face.html @@ -6,7 +6,7 @@ - +
- +
@@ -89,28 +89,30 @@

Pivot a cubble object between the nested/long (spatial/temporal) form

face_temporal(data, col)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 face_temporal(data, col)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 face_temporal(data, col)
 
 face_spatial(data)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 face_spatial(data)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 face_spatial(data)

Arguments

-
data
+ + +
data

a cubble object

-
col
+
col

a character (or a symbol), the list column to be expanded, col is required to be specified if there are more than one list column and the list column name is not ts.

@@ -118,9 +120,7 @@

Arguments

Value

- - -

a cubble object

+

a cubble object

@@ -143,15 +143,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/glyph.html b/reference/glyph.html index 54a95d34..04890641 100644 --- a/reference/glyph.html +++ b/reference/glyph.html @@ -3,7 +3,7 @@ - +
- +
@@ -138,14 +138,16 @@

Create glyph map with ggplot2

Arguments

-
mapping
+ + +
mapping

Set of aesthetic mappings created by aes(). If specified and inherit.aes = TRUE (the default), it is combined with the default mapping at the top level of the plot. You must supply mapping if there is no plot mapping.

-
data
+
data

The data to be displayed in this layer. There are three options:

If NULL, the default, the data is inherited from the plot @@ -159,7 +161,7 @@

Arguments

from a formula (e.g. ~ head(.x, 10)).

-
stat
+
stat

The statistical transformation to use on the data for this layer. When using a geom_*() function to construct a layer, the stat argument can be used the override the default coupling between geoms and @@ -172,7 +174,7 @@

Arguments

-
position
+
position

A position adjustment to use on the data for this layer. This can be used in various ways, including to prevent overplotting and improving the display. The position argument accepts the following:

  • The result of calling a position function, such as position_jitter(). @@ -185,7 +187,7 @@

    Arguments

-
...
+
...

Other arguments passed on to layer()'s params argument. These arguments broadly fall into one of 4 categories below. Notably, further arguments to the position argument, or aesthetics that are required @@ -213,36 +215,36 @@

Arguments

-
x_major, x_minor, y_major, y_minor
+
x_major, x_minor, y_major, y_minor

The name of the variable (as a string) for the major and minor x and y axes. Together, each unique combination of x_major and y_major specifies a grid cell.

-
y_scale, x_scale
+
y_scale, x_scale

The scaling function to be applied to each set of minor values within a grid cell. Defaults to identity so that no scaling is performed.

-
polar
+
polar

A logical of length 1, specifying whether the glyphs should be drawn in polar coordinates. Defaults to FALSE.

-
height, width
+
height, width

The height and width of each glyph. Defaults to 95% of the resolution of the data. Specify the width absolutely by supplying a numeric vector of length 1, or relative to the resolution of the data by using rel.

-
global_rescale
+
global_rescale

Whether rescale is performed globally or on each individual glyph.

-
show.legend
+
show.legend

logical. Should this layer be included in the legends? NA, the default, includes if any aesthetics are mapped. FALSE never includes, and TRUE always includes. @@ -250,7 +252,7 @@

Arguments

display.

-
inherit.aes
+
inherit.aes

If FALSE, overrides the default aesthetics, rather than combining with them. This is most useful for helper functions that define both data and aesthetics and shouldn't inherit behaviour from @@ -259,9 +261,7 @@

Arguments

Value

- - -

a ggplot object

+

a ggplot object

@@ -325,15 +325,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/index.html b/reference/index.html index 49b4d406..2f203c26 100644 --- a/reference/index.html +++ b/reference/index.html @@ -1,9 +1,9 @@ -Function reference • cubblePackage index • cubble - +
- +
@@ -191,15 +191,15 @@

Misc

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/make_spatial_sf.html b/reference/make_spatial_sf.html index f938a35b..6295def1 100644 --- a/reference/make_spatial_sf.html +++ b/reference/make_spatial_sf.html @@ -3,7 +3,7 @@ - +
- +
@@ -86,20 +86,22 @@

Update the spatial cubble to include the sf class

Arguments

-
x
+ + +
x

object of class spatial_cubble_df

-
sfc
+
sfc

object of class sfc (see package sf)

-
crs
+
crs

object of class crs (see package sf); if missing 'OGC:CRS84' is assumed (WGS84) and a message is emitted

-
silent
+
silent

logical; suppress message?

@@ -134,15 +136,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/make_temporal_tsibble.html b/reference/make_temporal_tsibble.html index d6318174..056c84fd 100644 --- a/reference/make_temporal_tsibble.html +++ b/reference/make_temporal_tsibble.html @@ -3,7 +3,7 @@ - +
- +
@@ -86,7 +86,9 @@

Update the temporal cubble to include the tsibble class (tbl_ts

Arguments

-
x
+ + +
x

object of class temporal_cubble_df

@@ -124,15 +126,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/matching.html b/reference/matching.html index b4c122f8..efeb1cc7 100644 --- a/reference/matching.html +++ b/reference/matching.html @@ -6,7 +6,7 @@ - +
- +
@@ -131,74 +131,76 @@

Match stations in two cubbles by spatial distance/ temporal similarity

Arguments

-
df1, df2
+ + +
df1, df2

the two cubble objects to match

-
crs
+
crs

a crs object from sf::st_crs()

-
which
+
which

character; for Cartesian coordinates only: one of Euclidean, Hausdorff or Frechet; for geodetic coordinates, great circle distances are computed; see details

-
par
+
par

for which equal to Hausdorff or Frechet, optionally use a value between 0 and 1 to densify the geometry

-
spatial_n_each
+
spatial_n_each

integer, the number of matched "station" in df2 for each df1 record

-
spatial_n_group
+
spatial_n_group

integer, the number of matched group (pair) return

-
data_id
+
data_id

a character (or symbol), the variable differentiates df1 and df2

-
match_id
+
match_id

a character (or symbol), the variable differentiate each group of match

-
temporal_matching
+
temporal_matching

logical, whether to match temporally

-
temporal_by
+
temporal_by

in the by syntax in dplyr::*_join(), the variables to match temporally in df1 and df2.

-
temporal_match_fn
+
temporal_match_fn

character, the function name on how two time series should be matched

-
temporal_n_highest
+
temporal_n_highest

numeric, the number of highest peak used for temporal matching in match_peak

-
temporal_window
+
temporal_window

The temporal window allowed in match_peak

-
...
+
...

parameters passing to temporal match

-
return_cubble
+
return_cubble

logical (default to false), whether to return the cubble object or a matching summary table

-
data
+
data

the resulting cubble object from spatial matching (with return_cubble = TRUE in spatial matching)

@@ -269,15 +271,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/netcdf.html b/reference/netcdf.html index 7d2dd3a2..62b0b5ef 100644 --- a/reference/netcdf.html +++ b/reference/netcdf.html @@ -3,7 +3,7 @@ - +
- +
@@ -90,20 +90,20 @@

Functions to extract NetCDF dimension and variables

Arguments

-
data
+ + +
data

a NetCDF file read in from ncdf4::nc_open()

-
vars
+
vars

variables to read, see the variables in your data with names(data$var)

Value

- - -

extracted netcdf4 components

+

extracted netcdf4 components

@@ -118,15 +118,15 @@

Value

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/reexports.html b/reference/reexports.html index e4ba456a..bafd8bca 100644 --- a/reference/reexports.html +++ b/reference/reexports.html @@ -10,7 +10,7 @@ - +
- +
@@ -106,15 +106,15 @@

Objects exported from other packages

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/river.html b/reference/river.html index e3920482..f6dcda27 100644 --- a/reference/river.html +++ b/reference/river.html @@ -3,7 +3,7 @@ - +
- +
@@ -122,15 +122,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/test-data.html b/reference/test-data.html index 88687ee6..b49bcc4b 100644 --- a/reference/test-data.html +++ b/reference/test-data.html @@ -9,7 +9,7 @@ - +
- +
@@ -146,15 +146,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/tsibble.html b/reference/tsibble.html index b97ba3e8..d86c483e 100644 --- a/reference/tsibble.html +++ b/reference/tsibble.html @@ -3,7 +3,7 @@ - +
- +
@@ -81,20 +81,22 @@

Gap-filling on the temporal component of a cubble object

-
# S3 method for temporal_cubble_df
+    
# S3 method for class 'temporal_cubble_df'
 fill_gaps(.data, ..., .full = FALSE, .start = NULL, .end = NULL)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 scan_gaps(.data, ...)

Arguments

-
.data
+ + +
.data

A tsibble.

-
...
+
...

A set of name-value pairs. The values provided will only replace missing values that were marked as "implicit", and will leave previously existing NA untouched.

  • empty: filled with default NA.

  • @@ -102,7 +104,7 @@

    Arguments

-
.full
+
.full
  • FALSE inserts NA for each keyed unit within its own period.

  • TRUE fills NA over the entire time span of the data (a.k.a. fully balanced panel).

  • start() pad NA to the same starting point (i.e. min(<index>)) across units.

  • @@ -110,16 +112,14 @@

    Arguments

-
.start, .end
+
.start, .end

Set custom starting/ending time that allows to expand the existing time spans.

Value

- - -

a cubble object

+

a cubble object

@@ -173,15 +173,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/unfold.html b/reference/unfold.html index e37686dd..a94afb2e 100644 --- a/reference/unfold.html +++ b/reference/unfold.html @@ -5,7 +5,7 @@ - +
- +
@@ -87,29 +87,29 @@

Augment spatial component into the long (temporal) form

unfold(data, ...)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 unfold(data, ...)
 
-# S3 method for temporal_cubble_df
+# S3 method for class 'temporal_cubble_df'
 unfold(data, ...)

Arguments

-
data
+ + +
data

a long cubble object

-
...
+
...

spatial variables to move into the long form, support tidyselect syntax

Value

- - -

a cubble object in the long form

+

a cubble object in the long form

@@ -162,15 +162,15 @@

Examples

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

- - + + diff --git a/reference/update.html b/reference/update.html index 7bbfc117..1a7bcae1 100644 --- a/reference/update.html +++ b/reference/update.html @@ -3,7 +3,7 @@ - +
- +
@@ -83,13 +83,15 @@

Temporary update cubble if the sf class take precedent of cubble classes

update_cubble(data, key, index, coords, ...)
 
-# S3 method for spatial_cubble_df
+# S3 method for class 'spatial_cubble_df'
 update_cubble(data, key = NULL, index = NULL, coords = NULL, ...)

Arguments

-
data, key, index, coords, ...
+ + +
data, key, index, coords, ...

see make_cubble

@@ -106,15 +108,15 @@

Arguments

-

Site built with pkgdown 2.0.9.

+

Site built with pkgdown 2.1.0.

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