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Generated catalog for sasascore module #173

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Generated catalog for sasascore module #173

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73 changes: 73 additions & 0 deletions packages/haddock3_catalog/public/catalog/haddock3.easy.yaml
View file
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Original file line number Diff line number Diff line change
Expand Up @@ -1946,6 +1946,79 @@ nodes:
tomlSchema:
resdic:
indexed: true
- id: sasascore
category: scoring
label: Surface accessibility scoring module.
description: HADDOCK3 module to perform accessibility scoring.
schema:
type: object
properties:
cutoff:
default: 0.4
title: relative side chain surface accessibility cutoff
description: relative side chain surface accessibility cutoff
$comment: relative side chain surface accessibility cutoff. Residues with
a relative side chain surface accessibility below this value are considered
buried.
type: number
maximum: 1.0
minimum: 0.0
resdic_buried:
default: {}
title: List of residues supposed to be buried
description: List of residues supposed to be buried
$comment: resdic_buried_* is an expandable parameter. You can provide resdic_buried_A,
resdic_buried_B, resdic_buried_C, etc, where the last capital letter is
the chain identifier.
type: object
additionalProperties:
type: array
items:
type: number
format: residue
minItems: 0
maxItems: 100
uniqueItems: true
default: []
propertyNames:
pattern: ^[A-Z]$
format: chain
maxPropertiesFrom: molecules
resdic_accessible:
default: {}
title: List of residues supposed to be accessible
description: List of residues supposed to be accessible
$comment: resdic_* is an expandable parameter. You can provide resdic_accessible_A,
resdic_accessible_B, resdic_accessible_C, etc, where the last capital letter
is the chain identifier.
type: object
additionalProperties:
type: array
items:
type: number
format: residue
minItems: 0
maxItems: 100
uniqueItems: true
default: []
propertyNames:
pattern: ^[A-Z]$
format: chain
maxPropertiesFrom: molecules
required: []
additionalProperties: false
uiSchema:
cutoff:
ui:group: scoring
resdic_buried:
ui:group: analysis
resdic_accessible:
ui:group: analysis
tomlSchema:
resdic_buried:
indexed: true
resdic_accessible:
indexed: true
- id: seletop
category: analysis
label: Select a number of models.
Expand Down
84 changes: 84 additions & 0 deletions packages/haddock3_catalog/public/catalog/haddock3.expert.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -8607,6 +8607,90 @@ nodes:
tomlSchema:
resdic:
indexed: true
- id: sasascore
category: scoring
label: Surface accessibility scoring module.
description: HADDOCK3 module to perform accessibility scoring.
schema:
type: object
properties:
cutoff:
default: 0.4
title: relative side chain surface accessibility cutoff
description: relative side chain surface accessibility cutoff
$comment: relative side chain surface accessibility cutoff. Residues with
a relative side chain surface accessibility below this value are considered
buried.
type: number
maximum: 1.0
minimum: 0.0
resdic_buried:
default: {}
title: List of residues supposed to be buried
description: List of residues supposed to be buried
$comment: resdic_buried_* is an expandable parameter. You can provide resdic_buried_A,
resdic_buried_B, resdic_buried_C, etc, where the last capital letter is
the chain identifier.
type: object
additionalProperties:
type: array
items:
type: number
format: residue
minItems: 0
maxItems: 100
uniqueItems: true
default: []
propertyNames:
pattern: ^[A-Z]$
format: chain
maxPropertiesFrom: molecules
resdic_accessible:
default: {}
title: List of residues supposed to be accessible
description: List of residues supposed to be accessible
$comment: resdic_* is an expandable parameter. You can provide resdic_accessible_A,
resdic_accessible_B, resdic_accessible_C, etc, where the last capital letter
is the chain identifier.
type: object
additionalProperties:
type: array
items:
type: number
format: residue
minItems: 0
maxItems: 100
uniqueItems: true
default: []
propertyNames:
pattern: ^[A-Z]$
format: chain
maxPropertiesFrom: molecules
probe_radius:
default: 1.4
title: Probe radius
description: Probe radius
$comment: Sets the probe radius (in Angstrom) used to compute solvent accessible
surface area.
type: number
maximum: 10.0
minimum: 0.0
required: []
additionalProperties: false
uiSchema:
cutoff:
ui:group: scoring
resdic_buried:
ui:group: analysis
resdic_accessible:
ui:group: analysis
probe_radius:
ui:group: analysis
tomlSchema:
resdic_buried:
indexed: true
resdic_accessible:
indexed: true
- id: seletop
category: analysis
label: Select a number of models.
Expand Down
84 changes: 84 additions & 0 deletions packages/haddock3_catalog/public/catalog/haddock3.guru.yaml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9035,6 +9035,90 @@ nodes:
tomlSchema:
resdic:
indexed: true
- id: sasascore
category: scoring
label: Surface accessibility scoring module.
description: HADDOCK3 module to perform accessibility scoring.
schema:
type: object
properties:
cutoff:
default: 0.4
title: relative side chain surface accessibility cutoff
description: relative side chain surface accessibility cutoff
$comment: relative side chain surface accessibility cutoff. Residues with
a relative side chain surface accessibility below this value are considered
buried.
type: number
maximum: 1.0
minimum: 0.0
resdic_buried:
default: {}
title: List of residues supposed to be buried
description: List of residues supposed to be buried
$comment: resdic_buried_* is an expandable parameter. You can provide resdic_buried_A,
resdic_buried_B, resdic_buried_C, etc, where the last capital letter is
the chain identifier.
type: object
additionalProperties:
type: array
items:
type: number
format: residue
minItems: 0
maxItems: 100
uniqueItems: true
default: []
propertyNames:
pattern: ^[A-Z]$
format: chain
maxPropertiesFrom: molecules
resdic_accessible:
default: {}
title: List of residues supposed to be accessible
description: List of residues supposed to be accessible
$comment: resdic_* is an expandable parameter. You can provide resdic_accessible_A,
resdic_accessible_B, resdic_accessible_C, etc, where the last capital letter
is the chain identifier.
type: object
additionalProperties:
type: array
items:
type: number
format: residue
minItems: 0
maxItems: 100
uniqueItems: true
default: []
propertyNames:
pattern: ^[A-Z]$
format: chain
maxPropertiesFrom: molecules
probe_radius:
default: 1.4
title: Probe radius
description: Probe radius
$comment: Sets the probe radius (in Angstrom) used to compute solvent accessible
surface area.
type: number
maximum: 10.0
minimum: 0.0
required: []
additionalProperties: false
uiSchema:
cutoff:
ui:group: scoring
resdic_buried:
ui:group: analysis
resdic_accessible:
ui:group: analysis
probe_radius:
ui:group: analysis
tomlSchema:
resdic_buried:
indexed: true
resdic_accessible:
indexed: true
- id: seletop
category: analysis
label: Select a number of models.
Expand Down
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