diff --git a/app/js/app-menu.js b/app/js/app-menu.js
index 471ec534..ebbeb1b1 100644
--- a/app/js/app-menu.js
+++ b/app/js/app-menu.js
@@ -13,7 +13,7 @@ module.exports = function() {
var dynamicResize = appUtilities.dynamicResize.bind(appUtilities);
var layoutPropertiesView, generalPropertiesView,neighborhoodQueryView, pathsBetweenQueryView, pathsFromToQueryView, commonStreamQueryView, pathsByURIQueryView, promptSaveView, promptConfirmationView,
- promptMapTypeView, promptInvalidTypeWarning, promtErrorPD2AF, promptInvalidFileView, promptFileConversionErrorView, promptInvalidURIWarning, reactionTemplateView, gridPropertiesView, fontPropertiesView, fileSaveView,saveUserPreferencesView, loadUserPreferencesView;
+ promptMapTypeView, promptInvalidTypeWarning, promtErrorPD2AF, promptInvalidFileView, promptFileConversionErrorView, promptInvalidURIWarning, reactionTemplateView, gridPropertiesView, fontPropertiesView, fileSaveView,saveUserPreferencesView, loadUserPreferencesView, sifMapWarning;
function validateSBGNML(xml) {
$.ajax({
@@ -158,6 +158,7 @@ module.exports = function() {
promptMapTypeView = appUtilities.promptMapTypeView = new BackboneViews.PromptMapTypeView({el: '#prompt-mapType-table'});
promptInvalidFileView = appUtilities.promptInvalidFileView = new BackboneViews.PromptInvalidFileView({el: '#prompt-invalidFile-table'});
promptInvalidTypeWarning = appUtilities.promptInvalidTypeWarning = new BackboneViews.PromptInvalidTypeWarning({el: '#prompt-errorInvalidType-table'});
+ sifMapWarning = appUtilities.sifMapWarning = new BackboneViews.SifMapWarning({el: '#errorSifMap-table'});
promtErrorPD2AF = appUtilities.promtErrorPD2AF = new BackboneViews.PromtErrorPD2AF({el: '#prompt-errorPD2AF-table'});
promptFileConversionErrorView = appUtilities.promptFileConversionErrorView = new BackboneViews.PromptFileConversionErrorView({el: '#prompt-fileConversionError-table'});
reactionTemplateView = appUtilities.reactionTemplateView = new BackboneViews.ReactionTemplateView({el: '#sbgn-bricks-table'});
@@ -450,10 +451,22 @@ module.exports = function() {
});
$("#import-sif-style").click(function () {
+ //Check if current map type is SIF
+ var mapType = appUtilities.getActiveChiseInstance().elementUtilities.mapType;
+ if (mapType != "SIF") {
+ sifMapWarning.render();
+ return;
+ }
$("#sif-style-input").trigger('click');
});
$("#import-sif-layout").click(function () {
+ //Check if current map type is SIF
+ var mapType = appUtilities.getActiveChiseInstance().elementUtilities.mapType;
+ if (mapType != "SIF") {
+ sifMapWarning.render();
+ return;
+ }
$("#sif-layout-input").trigger('click');
});
diff --git a/app/js/backbone-views.js b/app/js/backbone-views.js
index 09a138af..82fe96fc 100644
--- a/app/js/backbone-views.js
+++ b/app/js/backbone-views.js
@@ -3225,7 +3225,7 @@ var FileSaveView = Backbone.View.extend({
self.template = _.template($("#file-save-template").html());
// Check for unsupported conversions
- map_type = appUtilities.getActiveChiseInstance().elementUtilities.mapType;
+ mapType = appUtilities.getActiveChiseInstance().elementUtilities.mapType;
var unsupportedConversions = {
"PD": ["sif", "sifLayout"],
"AF": ["sif", "sifLayout", "sbml", "celldesigner", "gpml"],
@@ -3235,7 +3235,7 @@ var FileSaveView = Backbone.View.extend({
"HybridAny": ["sbgn", "sif", "sifLayout", "sbml", "celldesigner", "gpml"]
};
- if (unsupportedConversions[map_type] && unsupportedConversions[map_type].includes(fileformat)) {
+ if (unsupportedConversions[mapType] && unsupportedConversions[mapType].includes(fileformat)) {
var exportErrorView = new ExportErrorView({el: "#exportError-table",});
exportErrorView.render();
document.getElementById("export-error-message").innerText = "Not applicable for the current map type!";
@@ -3331,6 +3331,20 @@ var FileSaveView = Backbone.View.extend({
var saveAsFcn = chiseInstance.saveAsNwt;
if (fileformat === "sbgn") {
+ if (chiseInstance.elementUtilities.mapType === "SBML") {
+ console.log("fileformat is sbgn and maptype is SBML");
+ chiseInstance.saveAsSbgnmlForSBML(filename, function () {
+ var promptSbmlConversionErrorView =
+ new PromptSbmlConversionErrorView({
+ el: "#prompt-sbmlConversionError-table",
+ });
+ promptSbmlConversionErrorView.render();
+ document.getElementById("file-conversion-error-message").innerText =
+ "Conversion service is not available!";
+ }
+ );
+ return;
+ }
saveAsFcn = chiseInstance.saveAsSbgnml;
}
@@ -3394,14 +3408,27 @@ var FileSaveView = Backbone.View.extend({
"Conversion service is not available!";
});
} else if (fileformat === "sbml") {
- chiseInstance.saveAsSbml(filename, function (data, errorMessage) {
- var promptSbmlConversionErrorView =
- new PromptSbmlConversionErrorView({
- el: "#prompt-sbmlConversionError-table",
- });
- promptSbmlConversionErrorView.render(data, errorMessage);
- //document.getElementById("file-conversion-error-message").innerText = "Conversion service is not available!";
- });
+
+ if (mapType === "PD") {
+ chiseInstance.saveAsSbml(filename, function (data, errorMessage) {
+ var promptSbmlConversionErrorView =
+ new PromptSbmlConversionErrorView({
+ el: "#prompt-sbmlConversionError-table",
+ });
+ promptSbmlConversionErrorView.render(data, errorMessage);
+ //document.getElementById("file-conversion-error-message").innerText = "Conversion service is not available!";
+ });
+ } else if (mapType === "SBML") {
+ chiseInstance.saveSbmlForSBML(filename, function (data, errorMessage) {
+ var promptSbmlConversionErrorView =
+ new PromptSbmlConversionErrorView({
+ el: "#prompt-sbmlConversionError-table",
+ });
+ promptSbmlConversionErrorView.render(data, errorMessage);
+ //document.getElementById("file-conversion-error-message").innerText = "Conversion service is not available!";
+ });
+ }
+
} else if (fileformat === "gpml") {
chiseInstance.saveAsGpml(filename, function (data, errorMessage) {
var promptSbmlConversionErrorView =
@@ -4335,6 +4362,30 @@ var PromptInvalidTypeWarning = Backbone.View.extend({
return this;
},
});
+
+var SifMapWarning = Backbone.View.extend({
+ initialize: function () {
+ var self = this;
+ self.template = _.template($("#sifMapWarning-template").html());
+ },
+ render: function () {
+ var self = this;
+ self.template = _.template($("#sifMapWarning-template").html());
+
+ $(self.el).html(self.template);
+ $(self.el).modal("show");
+
+ $(document)
+ .off("click", "#sifMapWarning-confirm")
+ .on("click", "#sifMapWarning-confirm", function (evt) {
+ $(self.el).modal("toggle");
+ });
+
+ return this;
+ },
+});
+
+
var PromtErrorPD2AF = Backbone.View.extend({
initialize: function () {
var self = this;
@@ -6940,6 +6991,7 @@ module.exports = {
PromptMapTypeView: PromptMapTypeView,
PromptInvalidFileView: PromptInvalidFileView,
PromptInvalidTypeWarning: PromptInvalidTypeWarning,
+ SifMapWarning: SifMapWarning,
PromtErrorPD2AF: PromtErrorPD2AF,
PromptFileConversionErrorView: PromptFileConversionErrorView,
ExportErrorView: ExportErrorView,
diff --git a/index.html b/index.html
index 8a726534..7b932133 100644
--- a/index.html
+++ b/index.html
@@ -2588,6 +2588,13 @@
>
+
+
Error
+
+