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Introduction to R and FLR for Fisheries Scientists

3rd edition, January 2013. Varese (VA) & JRC Ispra, Italy

Ernesto Jardim Colin Millar Iago Mosqueira Chato Osio

EC - JRC IPSC Maritime Affairs Unit - FISHREG

AGENDA

Day 01

AM

  • 09.00 WELCOME - Introduction to R for Fisheries Science (IM, CO)
  • 09.30 Installing and setting up the system: R, RStudio (IM, CO)
  • 09.45 Getting started with R & RStudio (IM)
  • 10.00 T01 - R expressions, variables and objects
    • Basic R expressions
      • Creating and inspecting variables
      • The workspace
      • Getting help
  • 10.30 COFFEE
  • 11.00 T02 - VECTORS: creating, operating, arithmetics and plots (CO)
    • Creating vectors
      • Subsetting, logical selection, regular expressions
      • Plotting
      • LOGICAL, FACTORS, STRINGS
  • 12.00 E01 - VECTORS
  • 12.30 LUNCH

PM

  • 14.00 T03 - Matrices & arrays (IM)
    • matrix(), array()
      • Summary statistics
      • plot() et al.
  • 14.00 E02 - Matrices & arrays
  • 15.00 T04 - data.frame(s) (CO)
  • 15.30 COFFEE
  • 16.00 T05 - Importing your data (CO)
  • 16.30 E03 - Loading data, data.frame, plotting
  • 17.00 SUMMARY

Day 02

AM

  • 09.00 REVIEW, Q&A (IM, CO)
  • 09.15 Programming in R
  • Programming constructs
  • function()
  • debugging
  • pkgs
  • tips & tricks
  • 10.30 COFFEE
  • 12.30 LUNCH

PM

  • 14.00 MAPS PLOTTING LM
  • 15.30 COFFEE
  • 17.00 SUMMARY
    • pkgs, CRAN
    • manuals, books

Day 03

AM

  • 09.00 REVIEW, Q&A (IM, CO)
  • 09.15 Introduction to FLR
  • 09.30 Installing FLCore et al.
  • 09.45 T - Introducing FLCore
  • 10.30 COFFEE
  • 12.30 LUNCH

PM

  • 14.00
  • 15.30 COFFEE
  • 17.00 SUMMARY