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External software and data in PISA

PISA is distributed with some software and data obtained from outside the IceCube Collaboration. The authors and any pertinent copyrights are listed below. If you identify any mistakes in the below or find any other such components being distributed with PISA that are not listed here, please email or file an issue.

Unless noted below or in the contents of an individual file, all files distributed with PISA are Copyright (c) 2014-2017, The IceCube Collaboration, and are licensed under the Apache 2.0 license. See the LICENSE file for details.

MCEq

The service flux.mceq does not reproduce but does call upon the MCEq software.

https://github.com/afedynitch/MCEq

The authors of that software / the paper that it is based upon (A. Fedynitch, R. Engel, T. K. Gaisser, F. Riehn, T. Stanev) request that anyone who uses their work to produce results cite their work, so please do so if you make use the flux.mceq service. The form of the citation that they request is found in their documentation at

http://mceq.readthedocs.io/en/latest/citations.html

prob3numba

Files in the directory pisa/pisa/stages/osc/prob3numba were adapted from the CUDA re-implementation of Prob3++ called prob3GPU

https://github.com/rcalland/probGPU

which is cited by the paper

R. G. Calland, A. C. Kaboth, and D. Payne, Journal of Instrumentation 9, P04016 (2014).

Honda et al. flux models

Files in the directory example_resources/flux containing the name honda are from

http://www.icrr.u-tokyo.ac.jp/~mhonda

with associated paper

M. Honda, M. S. Athar, T. Kajita, K. Kasahara, and S. Midorikawa, Phys. Rev. D 92, 023004 (2015).

Barr et al. flux models

Files in the directory example_resources/flux containing the name bartol are modified slightly (to have similar format to the work by Honda et al. cited above) from

http://www-pnp.physics.ox.ac.uk/~barr/fluxfiles

with associated paper

G. D. Barr, T. K. Gaisser, P. Lipari, S. Robbins, and T. Stanev, Phys. Rev. D 70, 023006 (2004).

PREM

The preliminary reference Earth model data in the example_resources/osc directory (named PREM*) come from the paper

A. M. Dziewonski and D. L. Anderson, Physics of the Earth and Planetary Interiors 25, 297 (1981)

KDE

The file pisa/pisa/utils/vbwkde.py contains an implementation of (part of) the paper

Z. I. Botev, J. F. Grotowski, and D. P. Kroese, Ann. Statist. 38, 2916 (2010).

The functions isj_bandwidth and fixed_point therein are adapted directly from the Matlab implementation by Zdravko Botev at

https://www.mathworks.com/matlabcentral/fileexchange/14034-kernel-density-estimator

and are therefore subject to the following copyright:

  Copyright (c) 2007, Zdravko Botev
  All rights reserved.

  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions are
  met:

      * Redistributions of source code must retain the above copyright
        notice, this list of conditions and the following disclaimer.
      * Redistributions in binary form must reproduce the above copyright
        notice, this list of conditions and the following disclaimer in
        the documentation and/or other materials provided with the
        distribution

  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS
  IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED
  TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A
  PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER
  OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
  EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
  PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR
  PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
  LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING
  NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
  SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Versioneer

Automatic versioning is provided by public-domain sofware The Versioneer, written by Brian Warner (files versioneer.py and pisa/_version.py). This project can be found at

https://github.com/warner/python-versioneer