NAMESPACE

# Generated by roxygen2: do not edit by hand

export(abundance)
export(blast)
export(collapse)
export(dada_denoise)
export(download_blast)
export(file_reader)
export(filter_and_trim)
export(ftquantile)
export(ie)
export(load_taxonomy)
export(merge_pairs)
export(mergeout_to_table)
export(osu_dataset_match)
export(osu_matches)
export(osu_sequences)
export(pool_rexmap_results)
export(print_species)
export(print_strains)
export(random_sequences)
export(read_files)
export(remove_pcr_primers)
export(reverse_complement)
export(rexmap_db_version)
export(rexmap_option)
export(rexmap_setoption)
export(sampleids_from_filenames)
export(sequence_abundance)
export(sequence_length_table)
export(sequences_to_fasta)
export(summarize_osu_label)
export(taxonomy)
export(update_database)
export(write_table)
importFrom(dada2,filterAndTrim)
importFrom(data.table,as.data.table)
importFrom(data.table,copy)
importFrom(data.table,data.table)
importFrom(data.table,dcast)
importFrom(data.table,key)
importFrom(data.table,setcolorder)
importFrom(data.table,setkey)
importFrom(data.table,setorder)
importFrom(igraph,add_edges)
importFrom(igraph,add_vertices)
importFrom(igraph,as.undirected)
importFrom(igraph,clusters)
importFrom(igraph,groups)
importFrom(igraph,make_empty_graph)
importFrom(igraph,make_graph)
importFrom(limSolve,lsei)
importFrom(pso,psoptim)
importFrom(stringr,str_sub)
useDynLib(rexmap)