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Dimitri Papadopoulos Orfanos edited this page Apr 3, 2017
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We discuss software infrastructure of the Imagen project.
The Imagen project is a longitudinal study with 4 time points so far:
| ID | Time point | Age |
|---|---|---|
| BL | baseline | 14 |
| FU1 | follow up 1 | 16 |
| FU2 | follow up 2 | 19 |
| FU3 | follow up 3 | 22 |
The databank team collect, curate, and publish data from the following recruitment and acquisition centres:
| ID | CENTRE |
|---|---|
| 01 | LONDON |
| 02 | NOTTINGHAM |
| 03 | DUBLIN |
| 04 | BERLIN |
| 05 | HAMBURG |
| 06 | MANNHEIM |
| 07 | PARIS |
| 08 | DRESDEN |
Documentation inherited from the initial database team for baseline (BL) and follow up 1 (FU1) is available via SFTP on the Imagen database server.
| fmri_current_v1.pdf | Benjamin Thyreau | 2010-09-24 |
| fmri model setting and contrasts list | ||
| QCgenotypeBatch12-1.pdf | Jean-Baptiste Poline | 2010-10-18 |
| This document describes the quality check on the SNP data ie which subjects were removed and why. | ||
| Database_handling_Berlin_workshop_slides.pdf | Alexis Barbot | 2010-11-03 |
| Slides of the presentation done at Berlin workshop on Database Handling ( 28th of October 2010 ) | ||
| processings_faq.pdf | Benjamin Thyreau | 2011-01-13 |
| FAQ on imaging data processings | ||
| Gender_and_age_inclusion_schema.pdf | Alexis Barbot | 2011-03-08 |
| Some explanations regarding age and gender, where does it come from and how can it be missing. | ||
| Genetic_qc_readme.txt | Alexis Barbot | 2011-07-28 |
| Description of the various files from the genetic qc. | ||
| parzen_outlier_scores.txt | Alexis Barbot | 2012-04-10 |
| Details about the fMRI Contrasts Parzen outlier scores | ||
| WP4_SOP_Annex_instruments_variable_names.pdf | Maren Struve | 2012-04-12 |
| This is a document describing the instruments and their variable names It can also be found in millarium as WP4_SOP_Annex.doc | ||
| freesurfer_QC.rst | Jean-Baptiste Poline | 2012-04-25 |
| A description of the freesurfer Quality Check data | ||
| check_estimable.py | Jean-Baptiste Poline | 2012-08-01 |
| A python script to help finding the non estimable contrast. | ||
| R_check_estimable.rc | Jean-Baptiste Poline | 2012-08-01 |
| An R extract to help finding the non estimable contrasts. | ||
| DTIpreprocessing.pdf | Hervé Lemaître | 2013-11-28 |
| Processings details and authorships | ||
| IMAGEN_DATA_ACCESS_2015-10-08.pdf | Dimitri Papadopoulos | 2015-10-08 |
| To access BL, FU1 and FU2 data, use the new Imagen V2 server. The legacy XNAT server will remain available to serve BL/FU1 data frozen in its 2011 state. | ||
| imagen_data.zip | John Rogers | 2017-02-14 |
| original Imagen SPPS processing scripts for Psytools | ||