TCGA_CD

#!/bin/bash

REALPATH="$(realpath "$0")"
BASEDIR="$(dirname "$REALPATH")"
case "$BASEDIR" in
	/*)
		true
		;;
	*)
		BASEDIR="${PWD}/$BASEDIR"
		;;
esac

type -a docker > /dev/null

if [ $? -ne 0 ] ; then
	echo "UNCONFIGURED: No docker executable" 1>&2
	exit 1
fi

PYBASEDIR="${BASEDIR}/.py2Env"
# Is there a prepared Python environment??
if [ -d "$PYBASEDIR" ] ; then
	source "${PYBASEDIR}/bin/activate"
	exec python "${BASEDIR}"/TCGA_CD.py "$@"
else
	echo "UNCONFIGURED: Python environment" 1>&2
	exit 1
fi