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Handle small files #89

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AlistairNWard opened this issue May 23, 2018 · 0 comments

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AlistairNWard commented May 23, 2018

If the inputted BAM file is small, we need to ensure we sample only from regions where data exists.

Can we check the file size and for files smaller than a cutoff, just parse the entire file? We would need to figure out how small a file needs to be for this to be an option.
Can we use the index to localize where we sample from?

This was referenced Jul 31, 2018

Small bam files #55

Closed

File hangs both apps #92

Closed

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