The QC page fails to load bam stats (intermittent) #458
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tonydisera
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…personal repos. Fix example data config fix to use correct bed for GRCh38.
tonydisera
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Jan 6, 2022
#458 Serve GRCh37 and GRCh38 bed from AWS S3 bucket rather than from …
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I was using the bed file for GRCh37 rather than GRCh38. To test, please run clin.iobio standalone, and select 'Load your data' and 'Upload configuration file'. Download the example data config file and then choose that file. On the Review case page, you should see coverage histogram charts filled in for Proband, Mother, and Father. |
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When I use standalone clin.iobio and provide the data config for GRCh38, the bam stats don't always load. This seems to be related to server load because when I also provide a list of variants to import, the bam stats seem to fail consistently. After the variants have been analyzed, if I go back the the QC tab, the bam stats will load.
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