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HPO gene selection fails (genepanel) #476

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AlistairNWard opened this issue Jul 12, 2022 · 1 comment
Open

HPO gene selection fails (genepanel) #476

AlistairNWard opened this issue Jul 12, 2022 · 1 comment
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@AlistairNWard
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Go to genepanel and enter the terms at the end of this issue. Just take the HPO terms that are automatically selected, then, when the list is complete, go to the HPO tab. There is a chart where I can select the genes overlapping a certain number of HPO terms, but it doesn't work. I want to select all genes that overlap 7 or more terms, but it won't let me

Screen Shot 2022-07-12 at 10 13 01 AM

Ventricular septal defect HP:0001629,
Atrial septal defect HP:0001631,
Coarctation of aorta HP:0001680,
Double outlet right ventricle HP:0001719
Anal stenosis HP:0002025
Abnormality of the cervical spine HP:0003319
Multicystic kidney dysplasia HP:0000003
Cerebellar hypoplasia HP:0001321
Hypospadias HP:0000047
Bifid scrotum HP:0000048
Cryptorchidism HP:0000028
Ambiguous genitalia HP:0000062
Dysplastic corpus callosum HP:0006989
Cerebellar vermis hypoplasia HP:0001320
Cerebellar hypoplasia HP:0001321
Apnea HP:0002104

@AlistairNWard AlistairNWard added the bug Something isn't working label Jul 12, 2022
@stefinfection stefinfection self-assigned this Jul 12, 2022
@AlistairNWard
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AlistairNWard commented Jul 21, 2022

Not sure if anyone has the bandwidth to look at this, but we're pushing Calypso to the UDN and should be releasing Mosaic on the joint called data today or tomorrow. I'm using genepanel and clin to look at some cases and keep seeing this. I know this isn't a good time, so don't worry if you can't, just wanted to see if it's a quick fix @stefinfection @tonydisera

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