From 7a45547b746a3ccc52466fb26d0c7ecdfffbf2d7 Mon Sep 17 00:00:00 2001 From: Piyush Acharya Date: Tue, 17 Dec 2024 00:07:47 -0800 Subject: [PATCH] Fix syntax and consistency --- README.md | 12 ++++++------ 1 file changed, 6 insertions(+), 6 deletions(-) diff --git a/README.md b/README.md index 4ff8945..2b7bf65 100644 --- a/README.md +++ b/README.md @@ -14,12 +14,12 @@ For thorough details, see the preprint: [Biorxiv](https://www.biorxiv.org/conten ## Usage -The [**SpaGCN**](https://github.com/jianhuupenn/SpaGCN) package is an implementation of a garph convolutional network for spatial transcriptomics. With SpaGCN, you can: +The [**SpaGCN**](https://github.com/jianhuupenn/SpaGCN) package is an implementation of a graph convolutional network for spatial transcriptomics. With SpaGCN, you can: - Preprocess spatial transcriptomics data from various formats. - Build a graph convolutional network with deep iterative clustering algorithm to identify spatial domains -- identify spatially variable genes for each spatial domain. -- Create mete genes to mark each spatial domains +- Identify spatially variable genes for each spatial domain. +- Create meta genes to mark each spatial domains ## Tutorial @@ -39,9 +39,9 @@ https://drive.google.com/drive/folders/1zten54vkjorp26T4iD0ApQGa9ut5eY42?usp=sha Please install Jupyter in order to open this notebook. #### New Features! EZ Mode SpaGCN now available. -For users who are new to Python, we provide an Easy Mode SpaGCN. The parameter setting and intermedium steps are simplified. +For users who are new to Python, we provide an Easy Mode SpaGCN. The parameter setting and intermediate steps are simplified.
-Important Notes: This easy mode ONLY have basic functions and is ONLY for analysis purpose. +Important Notes: This easy mode ONLY has basic functions and is ONLY for analysis purpose.
For method comparison, debugging, customizing parameters, and checking intermedium outputs, please refer to the detailed tutorial above.
@@ -77,7 +77,7 @@ Environment 3: ## Contributing -Souce code: [Github](https://github.com/jianhuupenn/SpaGCN) +Source code: [Github](https://github.com/jianhuupenn/SpaGCN) We are continuing adding new features. Bug reports or feature requests are welcome.