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Week 1 RStudio + Version Control
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Week 2 More Git/GitHub
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Week 3 GitHub
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<h1 class="title toc-ignore">More Git</h1>
</div>
<table class="table" style="margin-left: auto; margin-right: auto;">
<tbody>
<tr>
<td style="text-align:left;color: white !important;background-color: blue !important;width: 20%; ">
Compartmentalized
</td>
<td style="text-align:left;color: white !important;background-color: blue !important;width: 20%; ">
Documented
</td>
<td style="text-align:left;color: white !important;background-color: blue !important;width: 20%; ">
Extendible
</td>
<td style="text-align:left;color: white !important;background-color: blue !important;width: 20%; ">
Reproducible
</td>
<td style="text-align:left;color: white !important;background-color: blue !important;width: 20%; ">
Robust
</td>
</tr>
</tbody>
</table>
<div id="overview" class="section level1">
<h1>Overview</h1>
<p>Here I will cover a few more come Git tasks and show some straight-forward ways to do these tasks</p>
<ul>
<li>How to clone someone else’s GitHub or GitLab repository</li>
<li>How to clone your own repository–when you want to make a copy and use that as a template for something new.</li>
</ul>
<!--
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<h2>Downloading other people’s repositories</h2>
<p>There are two easy ways to do this. Use the one that seems more logical to you.</p>
<p>Method 1.</p>
<ol style="list-style-type: decimal">
<li>In a browser, go to the GitHub (or GitLab) repository you want to copy.</li>
<li>Copy its url.</li>
<li>Open GitHub or GitLab.<br />
</li>
<li>If using GitHub, click the <code>+</code> in top right and click <code>import repository</code>. Paste in the url and give your repo a name.</li>
<li>If using GitLab, click <code>New Project</code> on right, then <code>Import Repository</code> tab, then click <code>Repo by URL</code>. Paste in url and give repo a name.</li>
<li>Open RStudio and click the project tab in the top right and select, <code>New Project</code>. Then select <code>Version Control</code> and paste in the url of <strong>your</strong> repository’s url. For example, <code>https://github.com/<youraccount>/Test</code><br />
</li>
<li>Add the new repo to GitHub Desktop. Open GitHub Desktop, select File>Add Local Repository and navigate to the folder with the new repository.</li>
</ol>
<p>Method 2.</p>
<p>Steps 1-4 are the same but you can swap step 5 and 6.</p>
<ol start="5" style="list-style-type: decimal">
<li>Open GitHub Desktop. Select File>Clone Repository. Paste in the repository url that you are copying and tell it where to save the repository.</li>
<li>Open RStudio and click the project tab in the top right and select, <code>New Project</code>. Then select <code>Existing Directory</code> and navigate to the directory where you just saved the repo.</li>
</ol>
<p>You can also clone someone elses repo directly into RStudio or GitHub Desktop and then “Publish” to GitHub or GitLab. I am not going to show that but I show that on this <a href="Git-RStudio.html">page</a>. For GitLab, it will require issuing Git commands from a terminal. Note, in my experience, method 1 or 2 above is the way to avoid Git-misery as a Git beginner.</p>
</div>
<div id="making-a-copy-of-your-own-repository" class="section level2">
<h2>Making a copy of your own repository</h2>
<p>Let say you want to make a copy of a repository and use it as a template to make something else. And you don’t want the history!</p>
<ol style="list-style-type: decimal">
<li>Make a blank repo on GitHub or GitLab (add that Readme file)</li>
<li>Pull that down to your computer</li>
<li>Copy the repo you want to copy into the new repo folder but <strong>do not copy the .git folder</strong>. Remember the <code>.git</code> folder is hidden.</li>
</ol>
</div>
</div>
<hr>
<div style="text-align: center">
<i class="fas fa-cubes"></i> NWFSC Math Bio Program <i class="fas fa-cubes"></i>
</div>
</div>
</div>
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