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CHANGELOG.md

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Daily Change Log:
  • [2024.11.8] - Changed enzyme_commissions type in reformat_pykofamsearch from set to list for consistency with veba --module annotate
  • [2024.11.7] - Added enzyme commission (EC) identifiers to pykofamsearch/reformat_pykofamsearch output and deprecated reformat_enzymes.py
  • [2024.11.7] - Added online (download) and offline modes to serialize_kofam_models and automatically parsed enzyme commission (EC) identifiers
  • [2024.10.18] - Uses entry points for executables instead of copying scripts to bin/
  • [2024.7.15] - Added assertion to check that name_to_hmm dictionary is not empty which can happen if --profiles are the wrong directory Issue #5
  • [2024.7.15] - Added scaled_threshold and prevent scaled threshold from compoundin in Pulls #2,3,6
  • [2024.7.8] - Added --threshold argument and fixed missing_kos error.
  • [2024.4.25] - Changed default version of PyHmmer to 0.10.12 because of PyHmmer Issue #67
Pending
  • Add script to download data and transform metadata table to include a column for EC
  • Add length cutoff option
  • Add enzyme information to relevant KOs during serialization
  • Add bin/ directory and move executables to it.