diff --git a/CHANGELOG.rst b/CHANGELOG.rst index 514615c..55a663a 100644 --- a/CHANGELOG.rst +++ b/CHANGELOG.rst @@ -3,6 +3,28 @@ Hey, let's keep a change log. next ---- +0.11.0 +---- +- Documentation updates +- New script: @RPINerd added fasta/fasta_size_report.py +- New script: fastq/validate_mate_pairing.py +- New script: general/report_matrix_shape.py +- New script: gff/remove_fasta_from_gff3.py +- New script: gtf/convert_stringtie_gtf_to_gff3.py +- fasta/fasta_simple_stats.py: Critical fix - Script was missing stats on last/only sequence. +- general/filter_columnar_file.pl renamed to general/filter_columnar_file_by_column_values.pl +- lib/biocode/utils.py: Added function fasta_file_from_dict() +- lib/biocode/gff.py: gff.print_gff3_from_assemblies() no longer automatically splits genes with multiple mRNAs +- lib/biocode/gff.py: Fixed error causing failure if print_gff3_from_assemblies() was called +- fastq/randomly_subsample_fastq.py: Corrected shebang line which was causing failures +- fastq/fastq_simple_stats.py: Added (optional) progress interval reporting +- fastq/fastq_simple_stats.py: Added commas to integer outputs for better human readability +- blast/calculate_query_coverage_by_blast.py: Added error handling so it reports/dies gracefully if an input seq isn't found +- fasta/filter_fasta_by_ids.pl: minor: added additional info if in debugging mode +- general/join_columnar_files.py: Corrected issue where header line was printing to STDOUT rather than output file +- gff/convert_tRNAScanSE_to_gff3.pl: @pgonzale60 committed improvments to satisfy NCBI's table2asn_GFF requirements +- fastq/fastq_simple_stats.py: Fixed issues where script would fail if file had no entries +- Critical bugfix and general improvements to sandbox/export_pasa_unigenes.py 0.10.0 ------