HighlightDisplay.h

//HighlightDisplay.h
#ifndef HIGH_DISP
#define HIGH_DISP

#include <QGLWidget>
#include <QString>
#include "NucleotideDisplay.h"
#include <string>
#include <vector>

using namespace std;
class QScrollArea;
class QLineEdit;
class QGridLayout;
class SequenceEntry;

class HighlightDisplay : public NucleotideDisplay
{
    Q_OBJECT

public:	
    HighlightDisplay(UiVariables* gui, GLWidget* gl);
    ~HighlightDisplay();
    QScrollArea* settingsUi();
    void display();
    GLuint render();
    vector<int> identifyMatches(string find);
    vector<unsigned short int> calculate(string find);
    void combine(vector< vector<int> >& results);

public slots:
    void setHighlightSequence(const QString&);
    void addNewSequence();
    void addNewSequence(string);
    void openQueryFile();
    void removeEntry(SequenceEntry*);
    void clearAllEntries();
    void setPercentSimilarity(int);

signals:
    void highlightChanged(const QString&);

private:
    int rowCount;
    vector<SequenceEntry*> seqLines;
    double percentage_match;
    QCheckBox* reverseCheck;
    QLineEdit* activeSeqEdit;
    QGridLayout* formLayout;
    QFrame* settingsBox;
    QPushButton* addButton;


    /*
public slots:	
    void changeWidth(int w);
    string mouseClick(point2D pt);

signals:

private:

*/
};

#endif