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comparison.txt
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comparison.txt
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FAIR:
CCCCCC
single no trim: 6.51182
occ.: 37067
single trim: 13.978
occ.: ""
CTGTCTCTTATACACATCT
single no trim: 6.31776
occ.: 1
single trim: 15.116
occ.: 1
paired no trim: 12.3054
paired trim: 27.7053
occ.: Error
paired no trim: 12.455
paired trim: 28.3724
occ.:
Adapter Removal v2:
SINGLE NO TRIM:
rocessed a total of 1,909,263 reads in 12.8s; 149,000 reads per second on average ...
real 0m12,779s
user 0m11,174s
sys 0m0,741s
SINGLE TRIM:
Processed a total of 1,909,263 reads in 11.9s; 160,000 reads per second on average ...
real 0m11,892s
user 0m10,497s
sys 0m0,720s
PAIRED NO TRIM:
Processed a total of 3,818,526 reads in 33.3s; 114,000 reads per second on average ...
real 0m33,310s
user 0m29,275s
sys 0m1,649s
PAIRED TRIM:
Processed a total of 3,818,526 reads in 35.9s; 106,000 reads per second on average ...
real 0m35,911s
user 0m30,747s
sys 0m1,720s
Alien Trimmer:
single trim: 138.74
occ.: 1.351.398 trimmed
4.870 removed
paired trim:
[05:05] 1,909,263 read pairs processed: 2,898,475 trimmed (fwd: 1,351,398 rev: 1,547,077) 44,364 removed (fwd: 4,870 rev: 39,494)
301.69user 4.40system 5:05.37elapsed 100%CPU (0avgtext+0avgdata 148000maxresident)k
0inputs+2116920outputs (0major+32852minor)pagefaults 0swaps
Trimmomatic: