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Make "ensembl_gene_id" default option for all import functions. #5

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itsyogeshd opened this issue Dec 7, 2020 · 2 comments
Open

Make "ensembl_gene_id" default option for all import functions. #5

itsyogeshd opened this issue Dec 7, 2020 · 2 comments

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@itsyogeshd
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@SherryDong
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Could you list the functions ?

@itsyogeshd
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its db_preload() function also for get_IDtransfer() function, because of biomart update and older version of R, the function seems to fail with following error.

Error in UseMethod("filter_") :
no applicable method for 'filter_' applied to an object of class "c('tbl_SQLiteConnection', 'tbl_dbi', 'tbl_sql', 'tbl_lazy', 'tbl')"

but this is solved via adding useCache = FALSE in getBM() function, may be we add this in the get_IDtransfer() function as well.

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@SherryDong @itsyogeshd