This work was performed remotely on DTU's remote server computerome.
SRA accession numbers were obtained from BioProject PRJNA386519.
To start: manually connect to Tunnelblick.
# Login to the remote server computerome
ssh gstud01@10.44.152.8
# Type in password
********
# Go to the folder Project
cd Project
# Download the SRA files
wget ftp://ftp-trace.ncbi.nlm.nih.gov/sra/sra-instant/reads/ByRun/sra/SRR/SRRXXX/SRRXXXXXXX/SRRXXXXXXX.sra > SRRXXXXXXX.sra
# Rename the SRA files
mv SRRXXXXXXX.sra.1 SRRXXXXXXX.sra