dyn_eq300k_3.inp

[MD]
steps                  1000000    
stepsize                1
temperature             300
bath_coupling           100
separate_scaling        on
lrf                     on
shake_solvent           on

[sphere]
exclude_bonded		on 

[cut-offs]
q_atom                  99


[intervals]
non_bond                30
output               50000
trajectory            10000 
[files]
restart		dyn_eq300k_2.re
topology        BL.top
final           dyn_eq300k_3.re
trajectory	dyn_eq300k_3.dcd
fep		BL.fep

[lambdas]
1.0     0.0


[sequence_restraints]
3045    3050   0.5     1       0
3974    3989   0.5     1       0