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Add option for maximum parsimony ancestral reconstruction #76

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zenalapp opened this issue Oct 26, 2020 · 0 comments
Open

Add option for maximum parsimony ancestral reconstruction #76

zenalapp opened this issue Oct 26, 2020 · 0 comments
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enhancement New feature or request

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@zenalapp
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zenalapp commented Oct 26, 2020

Example of how to do this here (might want to check other sources as well):
https://www.r-phylo.org/wiki/HowTo/Ancestral_State_Reconstruction

Because sometimes maximum likelihood gives weird reconstructions that we wouldn't expect given our knowledge of the phenotype. Possibly useful for genotype as well.

Might be worth discussing whether to have the choice to mix and match parsimony and likelihood for phenotype and genotype reconstructions as well (e.g. parsimony for phenotype and likelihood for genotype).

@zenalapp zenalapp changed the title Add option for parsimony ancestral reconstruction Add option for maximum parsimony ancestral reconstruction Oct 26, 2020
@katiesaund katiesaund added the enhancement New feature or request label Jan 17, 2022
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