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read.cross for MapQTL format - locus file can't have split lines #27

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kbroman opened this issue Jan 6, 2015 · 0 comments
Open

read.cross for MapQTL format - locus file can't have split lines #27

kbroman opened this issue Jan 6, 2015 · 0 comments
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@kbroman
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kbroman commented Jan 6, 2015

I got an email from a user having trouble reading in data in MapQTL format. It turned out that the locus file had split lines, like this:

P486393_4HS    <nnxnp> {-0}    
nn    np  nn  np  nn  np  nn  np  np  nn
TP511441_4  <nnxnp> {-0}    
nn    np  --  np  nn  nn  nn  nn  np  np

We should be able to handle this, since the number of loci and number of individuals are provided in the file.

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