main.yml

name: Build

on: [push, pull_request, workflow_dispatch]

jobs:
  build_wheels:
    name: Build wheels on ${{ matrix.os }}
    env:
      PREFIX: "/usr/local/"
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-20.04, macOS-13]
        #os: [ubuntu-latest, macOS-11]

    steps:
      - uses: actions/checkout@v4
      # Step to install xz on macOS before anything else
      - name: Install xz on macOS
        if: matrix.os == 'macOS-13'
        run: brew install xz
      - name: Install project dependencies
        run: which python; python -m pip install -r requirements.txt
      - name: Build wheels
        uses: pypa/cibuildwheel@v2.19.2
        env:
          CIBW_PROJECT_REQUIRES_PYTHON: ">=3.10,<3.13"  #  >=3.8 <3.12
          CIBW_SKIP: "*-win32 *-manylinux_i686 pp* *musl* "  # cp311-macosx*
          CIBW_ARCHS_MACOS: "x86_64 arm64"
          CIBW_ARCHS_LINUX: "auto"
          CIBW_BEFORE_ALL_MACOS: |
            bash ci/osx-deps
          CIBW_BEFORE_ALL_LINUX: bash ci/manylinux-deps
          CIBW_BEFORE_BUILD_MACOS: |
            ln -s /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11/cpython/longintrepr.h /Library/Frameworks/Python.framework/Versions/3.11/include/python3.11
            which python3
            python3 -m pip install -r requirements.txt
          CIBW_BEFORE_BUILD_LINUX: pip install -r requirements.txt
          CIBW_REPAIR_WHEEL_COMMAND_MACOS: delocate-wheel --require-archs x86_64 -w {dest_dir} -v {wheel} --require-target-macos-version 13.0
          CIBW_TEST_SKIP: "*-macosx_arm64"
          CIBW_TEST_REQUIRES: cython click>=8.0 numpy scipy pandas pysam>=0.22.0 networkx>=2.4 scikit-learn>=0.22 sortedcontainers lightgbm
          CIBW_TEST_COMMAND: dysgu test --verbose

      - uses: actions/upload-artifact@v4
        with:
          name: wheelhouse-${{ matrix.os }}-${{ github.run_id }}
          path: ./wheelhouse/*.whl