Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

no added DOIs in TEI from consolidation (docker or local) and (crossref or glutton) #1139

Open
bozo32 opened this issue Jul 7, 2024 · 1 comment

Comments

@bozo32
Copy link

bozo32 commented Jul 7, 2024

This might be a really basic one...
I've installed grobid on a linux box and configured it to consolodate using bibli-gluton (on the same computer). I installed glutton because when I ran consolodation with crossref I didn't see DOIs added to the TEI file references section. Same for biblioglutton.

Am I missing something? I thought that consolidation would enrich the TEI...and it does not seem to do so

what I have for logs is
WARN [2024-07-07 12:41:47,702] com.scienceminer.glutton.web.resource.LookupController: DOI did not matched or did not pass post validation
from glutton...there is only 1 DOI in the article as ingested
and I see a bucketload of these
INFO [2024-07-07 12:41:48,430] org.grobid.core.utilities.Consolidation: Consolidation service returns error (500) : Server Error

but bibliogutton seems to be properly installed

curl localhost:8075/service/data
{"ISTEX size":"{istex_doi2ids=0, istex_istex2ids=0, istex_pii2ids=0}","Crossref Metadata stored size":"{crossref_Jsondoc=0}","Total metadata indexed size":"{crossref_Jsondoc=0}","HAL Metadata stored size":"{hal_Jsondoc=0}","PMID size":"{pmid_doi2ids=0, pmid_pmc2ids=0, pmid_pmid2ids=0}","DOI OA size":"{unpayWall_doiOAUrl=

and the config.yaml for grobid does say that it is on localhost:8075

not running anything in docker as the docker install (full one) didn't consolidate using crossref either...well..I didn't see the DOIs in the reference section of the TEI.

@lfoppiano
Copy link
Collaborator

Hi @bozo32, if you look at the counter from /service/data, you will notice that every counter is 0.

Biblio glutton needs to be "loaded" after installing it. Please check here: https://biblio-glutton.readthedocs.io/en/latest/Build-Databases/

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants