-
Notifications
You must be signed in to change notification settings - Fork 42
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Issue with docker GPU #205
Comments
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Hi!
I am trying to use pepper for variant calling with docker (with GPU). I already have docker and CUDA 12 installed. I installed PyTorch inside a conda environment: when I try to
import pytorch
inside this environment it works andtorch.cuda.is_available()
returns True. However when I launch pepper-deepvariant from the same environment I get the following error: ERROR: TORCH IS NOT BUILT WITH CUDA.Is this because docker is not able to read from conda libraries? I also tried installing CUDA Toolkit and restarting docker but I still get the same error.
Thank you, I hope you can help with this
Marta
The text was updated successfully, but these errors were encountered: