nextflow.config

/*
====================================================================================
    v-met Nextflow config file
====================================================================================
    See files in the ./conf folder to change configuration
------------------------------------------------------------------------------------
*/

// Pipeline metadata
manifest {
    name              = 'v-met'
    author            = 'K-State Molecular NGS Lab'
    homePage          = 'https://ksumngs.github.io/v-met'
    description       = 'A bare-bones, ridiculously simple metagenomics pipeline for viruses'
    mainScript        = 'main.nf'
    nextflowVersion   = '!>=21.10.6'
    version           = '1.0.1'
    recurseSubmodules = true
}

// Capture exit codes from upstream processes when piping
process.shell = ['/bin/bash', '-euo', 'pipefail']

includeConfig 'conf/parameters.config'
includeConfig 'conf/profiles.config'
includeConfig 'conf/resources.config'
includeConfig 'conf/environment.config'
includeConfig 'conf/trace.config'
includeConfig 'conf/modules.config'