From 45c56a018668ba878d7bdc0b0d0043291434a060 Mon Sep 17 00:00:00 2001 From: kullrich Date: Fri, 22 Dec 2023 08:43:10 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20kullrich?= =?UTF-8?q?/CRBHits@36c04543d1cc592e9e8a7229f593b25be9c239ea=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- pkgdown.yml | 2 +- reference/rbh2dagchainer.html | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/pkgdown.yml b/pkgdown.yml index 6d8e231..0d1d98a 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,5 +4,5 @@ pkgdown_sha: ~ articles: V01CRBHitsBasicVignette: V01CRBHitsBasicVignette.html V02KaKsVignette: V02KaKsVignette.html -last_built: 2023-12-22T08:21Z +last_built: 2023-12-22T08:40Z diff --git a/reference/rbh2dagchainer.html b/reference/rbh2dagchainer.html index 64f6019..ad50358 100644 --- a/reference/rbh2dagchainer.html +++ b/reference/rbh2dagchainer.html @@ -299,7 +299,7 @@

Examples

rbhpairs=ath_selfhits_crbh, gene.position.cds1=ath.genepos, gene.position.cds2=ath.genepos) -#> [1] "/__w/_temp/Library/CRBHits/extdata/dagchainer/run_DAG_chainer.pl -i /tmp/Rtmp0CdOH1/file1f2543d5e20b -o 0 -e -3 -g 10000 -M 50 -D 200000 -E 0.001 -A 5 -I -s" +#> [1] "/__w/_temp/Library/CRBHits/extdata/dagchainer/run_DAG_chainer.pl -i /tmp/RtmphjHgG0/file19ac73dfdc39 -o 0 -e -3 -g 10000 -M 50 -D 200000 -E 0.001 -A 5 -I -s" head(ath_selfblast_crbh.dagchainer) #> gene1.chr gene1.seq.id gene1.start gene1.end gene1.mid gene1.idx gene2.chr #> 1 AA1:1 AT1G05100.1 1469541 1470881 1470211 437 AA1:1