From 80023869137e501768dde06a35a6212d32e44c04 Mon Sep 17 00:00:00 2001 From: Kristian Ullrich Date: Thu, 7 Nov 2024 06:25:20 +0100 Subject: [PATCH] # try to fix --- .gitlab-ci.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml index 1725f58..c5b7df0 100644 --- a/.gitlab-ci.yml +++ b/.gitlab-ci.yml @@ -4,7 +4,7 @@ before_script: - apt-get update - apt-get -y install pandoc libcurl4-openssl-dev r-cran-devtools r-cran-testthat r-cran-curl - R -e "install.packages('BiocManager'); BiocManager::install(version = '3.20')" - - R -e "dir(); getwd(); sessionInfo(); install.packages('devtools'); install.packages('pkgdown'); BiocManager::install('Biostrings'); devtools::install()" + - R -e "dir(); getwd(); sessionInfo(); install.packages('devtools'); install.packages('pkgdown'); BiocManager::install('MSA2dist'); devtools::install()" - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip last-1595.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/last-1595/')); system('make')" - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('tar -xvf KaKs_Calculator2.0_src.tar.gz')); setwd(paste0(find.package('CRBHits'), '/extdata/KaKs_Calculator2.0_src/src/')); system('make clean'); system('make')" - R -e "setwd(paste0(find.package('CRBHits'), '/extdata/')); system(paste0('unzip dagchainer.zip')); setwd(paste0(find.package('CRBHits'), '/extdata/dagchainer/')); system('make')"