From a954668c108d8fc6f00694864cf90d6be105d945 Mon Sep 17 00:00:00 2001 From: kullrich Date: Thu, 7 Nov 2024 05:56:46 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20kullrich?= =?UTF-8?q?/CRBHits@80023869137e501768dde06a35a6212d32e44c04=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/V01CRBHitsBasicVignette.html | 2 +- articles/V02KaKsVignette.html | 2 +- pkgdown.yml | 2 +- reference/rbh2dagchainer.html | 2 +- 4 files changed, 4 insertions(+), 4 deletions(-) diff --git a/articles/V01CRBHitsBasicVignette.html b/articles/V01CRBHitsBasicVignette.html index bceeb98..30930e4 100644 --- a/articles/V01CRBHitsBasicVignette.html +++ b/articles/V01CRBHitsBasicVignette.html @@ -87,7 +87,7 @@

CRBHits Basic Vignette

Kristian K Ullrich

-

2024-11-06

+

2024-11-07

Source: vignettes/V01CRBHitsBasicVignette.Rmd diff --git a/articles/V02KaKsVignette.html b/articles/V02KaKsVignette.html index 5bac932..0932831 100644 --- a/articles/V02KaKsVignette.html +++ b/articles/V02KaKsVignette.html @@ -87,7 +87,7 @@

KaKs Vignette

Kristian K Ullrich

-

2024-11-06

+

2024-11-07

Source: vignettes/V02KaKsVignette.Rmd diff --git a/pkgdown.yml b/pkgdown.yml index 224f1bd..3a9c9a3 100644 --- a/pkgdown.yml +++ b/pkgdown.yml @@ -4,4 +4,4 @@ pkgdown_sha: ~ articles: V01CRBHitsBasicVignette: V01CRBHitsBasicVignette.html V02KaKsVignette: V02KaKsVignette.html -last_built: 2024-11-06T19:08Z +last_built: 2024-11-07T05:53Z diff --git a/reference/rbh2dagchainer.html b/reference/rbh2dagchainer.html index 75638c4..91fcfd3 100644 --- a/reference/rbh2dagchainer.html +++ b/reference/rbh2dagchainer.html @@ -269,7 +269,7 @@

Examples

rbhpairs=ath_selfhits_crbh, gene.position.cds1=ath.genepos, gene.position.cds2=ath.genepos) -#> [1] "/__w/_temp/Library/CRBHits/extdata/dagchainer/run_DAG_chainer.pl -i /tmp/RtmpaICIss/file1702d36103e -o 0 -e -3 -g 10000 -M 50 -D 200000 -E 0.001 -A 5 -I -s" +#> [1] "/__w/_temp/Library/CRBHits/extdata/dagchainer/run_DAG_chainer.pl -i /tmp/RtmpJzDdsr/file16fe5ecc1a1d -o 0 -e -3 -g 10000 -M 50 -D 200000 -E 0.001 -A 5 -I -s" head(ath_selfblast_crbh.dagchainer) #> gene1.chr gene1.seq.id gene1.start gene1.end gene1.mid gene1.idx gene2.chr #> 1 AA1:1 AT1G05100.1 1469541 1470881 1470211 437 AA1:1